Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46846 * 111.00162 * 2 1 4 4 C 1.53030 * 109.52377 * 185.84294 * 3 2 1 5 5 C 1.53123 * 109.28009 * 300.82027 * 4 3 2 6 6 C 1.53118 * 109.15585 * 57.65675 * 5 4 3 7 7 H 1.09000 * 109.50693 * 62.28496 * 6 5 4 8 8 N 1.46500 * 109.50192 * 182.40447 * 6 5 4 9 9 C 1.34777 * 120.00003 * 204.80253 * 8 6 5 10 10 O 1.21686 * 120.00448 * 359.97438 * 9 8 6 11 11 C 1.46381 * 119.99887 * 179.97438 * 9 8 6 12 12 H 1.07997 * 120.00098 * 0.02562 * 11 9 8 13 13 C 1.40047 * 120.00002 * 179.97438 * 11 9 8 14 14 N 1.30672 * 119.99726 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47231 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47201 * 120.00282 * 15 13 11 18 18 H 1.48501 * 109.47305 * 240.00422 * 15 13 11 19 19 C 1.46846 * 111.00243 * 124.21528 * 2 1 3 20 20 H 1.09002 * 109.46518 * 295.78378 * 1 2 3 21 21 H 1.08995 * 109.47039 * 55.78736 * 1 2 3 22 22 H 1.09001 * 109.47064 * 175.79105 * 1 2 3 23 23 H 1.08999 * 109.46373 * 305.86398 * 3 2 1 24 24 H 1.08998 * 109.45881 * 65.82485 * 3 2 1 25 25 H 1.09003 * 109.50272 * 180.88314 * 4 3 2 26 26 H 1.08997 * 109.53617 * 60.78297 * 4 3 2 27 27 H 1.08993 * 109.52379 * 297.75279 * 5 4 3 28 28 H 1.08996 * 109.52598 * 177.55713 * 5 4 3 29 29 H 0.97005 * 119.99870 * 24.80467 * 8 6 5 30 30 H 0.97003 * 119.99744 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.45759 * 294.17597 * 19 2 1 32 32 H 1.09003 * 109.46299 * 54.15067 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1190 0.5369 1.0143 6 6 3.5183 -0.8715 1.0206 7 1 3.7814 -1.3836 0.0951 8 7 4.0448 -1.6227 2.1628 9 6 4.0826 -2.9694 2.1241 10 8 3.6790 -3.5614 1.1406 11 6 4.6093 -3.7198 3.2652 12 1 4.9672 -3.1945 4.1383 13 6 4.6481 -5.1192 3.2253 14 7 4.2146 -5.7549 2.1691 15 14 5.3209 -6.0769 4.6811 16 1 5.7449 -5.1297 5.7433 17 1 4.2651 -6.9758 5.2128 18 1 6.4869 -6.8865 4.2449 19 6 1.9954 -0.7709 1.1336 20 1 -0.3632 0.4470 0.9254 21 1 -0.3633 0.5778 -0.8498 22 1 -0.3633 -1.0249 -0.0754 23 1 1.5635 1.9258 -0.8329 24 1 1.7326 1.8607 0.9376 25 1 3.9100 2.3512 -0.1310 26 1 3.7819 0.8572 -1.0907 27 1 3.8889 1.0353 1.9559 28 1 5.1999 0.4712 0.8903 29 1 4.3663 -1.1508 2.9470 30 1 4.2411 -6.7242 2.1415 31 1 1.7326 -0.2710 2.0659 32 1 1.5637 -1.7717 1.1240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040716107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -45.054051 kcal Electronic energy + Delta-G solvation = -14411.839351 eV Core-core repulsion = 11985.739641 eV Total energy + Delta-G solvation = -2426.099710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.92576 -36.79992 -33.80536 -32.49423 -31.83220 -28.96097 -26.50886 -25.98682 -22.66846 -22.22294 -19.67117 -19.38310 -17.08298 -15.65780 -15.31667 -14.86888 -14.60178 -14.23858 -13.99624 -13.41585 -12.81772 -12.40167 -12.35358 -12.27679 -11.92792 -11.41868 -11.22576 -11.05154 -10.87085 -10.66406 -10.43646 -10.26372 -10.13225 -9.95655 -8.83714 -8.06759 -7.57429 -7.46247 -6.15341 -4.61057 3.14480 3.22582 3.27002 4.06558 4.19555 4.62036 4.85842 5.12712 5.19462 5.29353 5.44630 5.58057 5.62991 5.73240 5.86117 5.94623 5.96511 6.00754 6.03235 6.12285 6.28425 6.34689 6.72600 6.83296 7.33957 7.35691 7.46356 7.97506 8.16559 8.37507 9.05634 9.58443 10.63756 10.83036 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055256 B = 0.007243 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.607129 B = 3864.694187 C = 4111.152211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.542 5.542 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.127 4.127 6 C 0.160 3.840 7 H 0.083 0.917 8 N -0.763 5.763 9 C 0.554 3.446 10 O -0.577 6.577 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.087 3.913 14 N -0.768 5.768 15 Si 0.906 3.094 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.050 3.950 20 H 0.020 0.980 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.028 0.972 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.379 0.621 30 H 0.267 0.733 31 H 0.025 0.975 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 12.038 -0.795 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.165 4.165 6 C 0.053 3.947 7 H 0.102 0.898 8 N -0.417 5.417 9 C 0.358 3.642 10 O -0.459 6.459 11 C -0.583 4.583 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.731 3.269 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.079 4.079 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.210 0.790 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.077 11.171 -2.052 11.767 hybrid contribution 0.114 0.156 1.914 1.923 sum -2.963 11.327 -0.139 11.709 Atomic orbital electron populations 1.22317 0.87723 1.02297 0.99678 1.61850 1.07201 1.13016 1.44611 1.22087 0.95796 0.89604 0.99769 1.21525 0.94343 0.99639 0.99600 1.21869 1.00491 0.96000 0.98169 1.20427 0.90682 0.90701 0.92898 0.89847 1.46197 1.69742 1.07707 1.18072 1.18237 0.78555 0.79035 0.88360 1.90608 1.52087 1.67948 1.35280 1.20933 1.44340 0.91179 1.01895 0.91483 1.25704 0.93421 0.97985 0.96114 1.70037 1.34401 1.08413 1.26792 0.86340 0.78942 0.79760 0.81833 1.18836 1.20212 1.20171 1.22592 0.97396 0.98199 0.89690 0.96165 0.91812 0.91264 0.91223 0.95396 0.91700 0.90925 0.92456 0.91457 0.79000 0.92208 0.95706 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.59 60.07 0.58 0.96 16 2 N -0.54 -8.80 4.91 -242.96 -1.19 -9.99 16 3 C 0.06 0.74 5.46 -3.84 -0.02 0.72 16 4 C -0.11 -1.47 6.09 -26.65 -0.16 -1.64 16 5 C -0.13 -1.94 5.47 -26.61 -0.15 -2.08 16 6 C 0.16 3.19 2.61 -67.85 -0.18 3.02 16 7 H 0.08 1.95 7.58 -51.93 -0.39 1.56 16 8 N -0.76 -17.33 5.08 -55.14 -0.28 -17.61 16 9 C 0.55 15.91 7.71 -12.98 -0.10 15.81 16 10 O -0.58 -18.85 14.69 5.20 0.08 -18.77 16 11 C -0.55 -15.59 9.54 -35.63 -0.34 -15.93 16 12 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 13 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -23.26 11.83 55.55 0.66 -22.61 16 15 Si 0.91 20.31 29.56 -169.99 -5.02 15.29 16 16 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 C 0.05 0.96 5.04 -3.84 -0.02 0.94 16 20 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 21 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.38 7.59 8.58 -40.82 -0.35 7.24 16 30 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.83 8.12 -51.93 -0.42 1.41 16 LS Contribution 266.15 15.07 4.01 4.01 Total: -1.00 -33.60 266.15 -7.17 -40.77 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.93 Total: 4.75 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.49 Total: 4.17 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.82 Total: -50.21 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.08 Total: -18.77 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.60 -7.17 -40.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040716107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.283 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds