Wall clock time and date at job start Mon Mar 30 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46846 * 111.00162 * 2 1 4 4 C 1.53030 * 109.52377 * 185.84294 * 3 2 1 5 5 C 1.53123 * 109.28009 * 300.82027 * 4 3 2 6 6 C 1.53118 * 109.15585 * 57.65675 * 5 4 3 7 7 H 1.09000 * 109.50693 * 62.28496 * 6 5 4 8 8 N 1.46500 * 109.50192 * 182.40447 * 6 5 4 9 9 C 1.34777 * 120.00003 * 204.80253 * 8 6 5 10 10 O 1.21686 * 120.00448 * 359.97438 * 9 8 6 11 11 C 1.46381 * 119.99887 * 179.97438 * 9 8 6 12 12 H 1.07997 * 120.00098 * 0.02562 * 11 9 8 13 13 C 1.40047 * 120.00002 * 179.97438 * 11 9 8 14 14 N 1.30672 * 119.99726 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 120.00016 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47231 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47201 * 120.00282 * 15 13 11 18 18 H 1.48501 * 109.47305 * 240.00422 * 15 13 11 19 19 C 1.46846 * 111.00243 * 124.21528 * 2 1 3 20 20 H 1.09002 * 109.46518 * 295.78378 * 1 2 3 21 21 H 1.08995 * 109.47039 * 55.78736 * 1 2 3 22 22 H 1.09001 * 109.47064 * 175.79105 * 1 2 3 23 23 H 1.08999 * 109.46373 * 305.86398 * 3 2 1 24 24 H 1.08998 * 109.45881 * 65.82485 * 3 2 1 25 25 H 1.09003 * 109.50272 * 180.88314 * 4 3 2 26 26 H 1.08997 * 109.53617 * 60.78297 * 4 3 2 27 27 H 1.08993 * 109.52379 * 297.75279 * 5 4 3 28 28 H 1.08996 * 109.52598 * 177.55713 * 5 4 3 29 29 H 0.97005 * 119.99870 * 24.80467 * 8 6 5 30 30 H 0.97003 * 119.99744 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.45759 * 294.17597 * 19 2 1 32 32 H 1.09003 * 109.46299 * 54.15067 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1190 0.5369 1.0143 6 6 3.5183 -0.8715 1.0206 7 1 3.7814 -1.3836 0.0951 8 7 4.0448 -1.6227 2.1628 9 6 4.0826 -2.9694 2.1241 10 8 3.6790 -3.5614 1.1406 11 6 4.6093 -3.7198 3.2652 12 1 4.9672 -3.1945 4.1383 13 6 4.6481 -5.1192 3.2253 14 7 4.2146 -5.7549 2.1691 15 14 5.3209 -6.0769 4.6811 16 1 5.7449 -5.1297 5.7433 17 1 4.2651 -6.9758 5.2128 18 1 6.4869 -6.8865 4.2449 19 6 1.9954 -0.7709 1.1336 20 1 -0.3632 0.4470 0.9254 21 1 -0.3633 0.5778 -0.8498 22 1 -0.3633 -1.0249 -0.0754 23 1 1.5635 1.9258 -0.8329 24 1 1.7326 1.8607 0.9376 25 1 3.9100 2.3512 -0.1310 26 1 3.7819 0.8572 -1.0907 27 1 3.8889 1.0353 1.9559 28 1 5.1999 0.4712 0.8903 29 1 4.3663 -1.1508 2.9470 30 1 4.2411 -6.7242 2.1415 31 1 1.7326 -0.2710 2.0659 32 1 1.5637 -1.7717 1.1240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040716107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:27 Heat of formation + Delta-G solvation = -71.681012 kcal Electronic energy + Delta-G solvation = -14412.993983 eV Core-core repulsion = 11985.739641 eV Total energy + Delta-G solvation = -2427.254342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.42828 -38.73372 -35.49436 -34.53967 -33.39002 -30.63512 -28.12696 -27.63224 -24.06955 -23.61289 -21.51920 -20.92687 -19.08999 -17.44711 -17.07776 -16.26854 -16.02527 -15.85747 -15.51657 -14.89594 -14.34824 -14.26871 -14.07017 -13.60587 -13.19481 -13.06154 -12.86829 -12.64803 -12.60032 -12.34863 -11.98794 -11.79982 -11.55065 -11.40394 -10.94742 -9.83618 -9.50337 -9.27527 -8.28505 -6.85718 1.39853 1.40212 1.58216 2.24342 2.47366 2.80383 3.33599 3.61499 3.84281 3.96165 4.09558 4.22883 4.30754 4.48973 4.57452 4.62655 4.73629 4.76727 4.94685 4.96733 4.98923 5.09234 5.30428 5.32508 5.40368 5.87832 6.00982 6.18443 6.25451 6.35238 6.87034 7.57365 8.51286 8.68833 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055256 B = 0.007243 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.607129 B = 3864.694187 C = 4111.152211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.561 5.561 3 C 0.053 3.947 4 C -0.109 4.109 5 C -0.117 4.117 6 C 0.157 3.843 7 H 0.039 0.961 8 N -0.751 5.751 9 C 0.538 3.462 10 O -0.630 6.630 11 C -0.574 4.574 12 H 0.088 0.912 13 C 0.027 3.973 14 N -0.823 5.823 15 Si 0.999 3.001 16 H -0.246 1.246 17 H -0.269 1.269 18 H -0.268 1.268 19 C 0.065 3.935 20 H 0.031 0.969 21 H 0.091 0.909 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.041 0.959 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.035 0.965 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 14.039 0.637 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.287 5.287 3 C -0.074 4.074 4 C -0.147 4.147 5 C -0.155 4.155 6 C 0.051 3.949 7 H 0.057 0.943 8 N -0.405 5.405 9 C 0.342 3.658 10 O -0.517 6.517 11 C -0.611 4.611 12 H 0.106 0.894 13 C -0.188 4.188 14 N -0.453 5.453 15 Si 0.819 3.181 16 H -0.169 1.169 17 H -0.194 1.194 18 H -0.193 1.193 19 C -0.065 4.065 20 H 0.049 0.951 21 H 0.110 0.890 22 H 0.070 0.930 23 H 0.114 0.886 24 H 0.059 0.941 25 H 0.121 0.879 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.616 13.250 -0.610 13.520 hybrid contribution -0.068 -0.398 1.400 1.457 sum -2.684 12.853 0.790 13.154 Atomic orbital electron populations 1.22368 0.86194 1.01983 1.01445 1.61818 1.08805 1.14970 1.43094 1.22240 0.95809 0.87794 1.01525 1.21563 0.94338 1.01070 0.97736 1.21813 1.00452 0.92795 1.00429 1.20557 0.91852 0.92765 0.89766 0.94301 1.45875 1.68854 1.06317 1.19415 1.18632 0.78231 0.80924 0.87992 1.90563 1.54325 1.69691 1.37083 1.21483 1.44768 0.92336 1.02519 0.89422 1.27004 0.93032 0.99066 0.99694 1.70211 1.35898 1.09212 1.29933 0.84952 0.78173 0.77883 0.77132 1.16910 1.19394 1.19313 1.22233 0.96320 0.96447 0.91505 0.95062 0.89020 0.92954 0.88595 0.94110 0.87859 0.92149 0.90392 0.91165 0.77178 0.91625 0.94677 0.94986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.59 127.69 1.22 1.96 16 2 N -0.56 -17.84 4.91 -922.59 -4.53 -22.37 16 3 C 0.05 1.25 5.46 86.32 0.47 1.73 16 4 C -0.11 -2.53 6.09 30.65 0.19 -2.35 16 5 C -0.12 -3.35 5.47 30.67 0.17 -3.18 16 6 C 0.16 6.42 2.61 45.04 0.12 6.53 16 7 H 0.04 1.93 7.58 -2.39 -0.02 1.91 16 8 N -0.75 -34.87 5.08 -446.57 -2.27 -37.13 16 9 C 0.54 32.12 7.71 86.36 0.67 32.79 16 10 O -0.63 -43.64 14.69 -4.30 -0.06 -43.70 16 11 C -0.57 -33.23 9.54 24.83 0.24 -32.99 16 12 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 13 C 0.03 1.52 5.50 85.30 0.47 1.99 16 14 N -0.82 -51.57 11.83 21.84 0.26 -51.31 16 15 Si 1.00 41.59 29.56 68.60 2.03 43.62 16 16 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 17 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 C 0.06 2.52 5.04 86.33 0.43 2.95 16 20 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.10 1.80 8.09 -2.39 -0.02 1.78 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.39 15.64 8.58 -92.70 -0.80 14.84 16 30 H 0.27 15.48 8.29 -92.71 -0.77 14.72 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 1.53 8.12 -2.39 -0.02 1.51 16 Total: -1.00 -77.39 266.15 -0.30 -77.69 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.30 Total: 23.76 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 3.98 Total: 9.44 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -6.54 Total: -110.81 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.06 Total: -43.70 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -77.39 -0.30 -77.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040716107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.011 kcal (2) G-P(sol) polarization free energy of solvation -77.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds