Wall clock time and date at job start Mon Mar 30 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47000 * 2 1 4 4 C 1.34772 * 119.99924 * 180.27723 * 3 2 1 5 5 O 1.21580 * 120.00566 * 354.71049 * 4 3 2 6 6 N 1.34782 * 119.99868 * 174.70290 * 4 3 2 7 7 C 1.46501 * 120.00065 * 6.02001 * 6 4 3 8 8 C 1.50704 * 109.47167 * 89.99394 * 7 6 4 9 9 H 1.07999 * 119.99733 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99848 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00210 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99981 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46944 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47080 * 119.99966 * 12 10 8 15 15 H 1.48500 * 109.47082 * 240.00134 * 12 10 8 16 16 C 1.46504 * 119.99951 * 186.01542 * 6 4 3 17 17 C 1.52996 * 117.49954 * 16.45864 * 16 6 4 18 18 C 1.52997 * 60.00157 * 252.51019 * 17 16 6 19 19 H 1.08994 * 109.47241 * 60.00006 * 1 2 3 20 20 H 1.08997 * 109.46654 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46793 * 299.99899 * 1 2 3 22 22 H 1.09005 * 109.47292 * 240.00200 * 2 1 3 23 23 H 1.08997 * 109.47748 * 119.99908 * 2 1 3 24 24 H 0.97003 * 120.00145 * 359.97438 * 3 2 1 25 25 H 1.08992 * 109.47407 * 209.99573 * 7 6 4 26 26 H 1.09007 * 109.46763 * 329.99782 * 7 6 4 27 27 H 0.96990 * 119.99975 * 180.02562 * 11 10 8 28 28 H 1.09001 * 115.54339 * 162.17420 * 16 6 4 29 29 H 1.08998 * 117.49678 * 0.02562 * 17 16 6 30 30 H 1.08998 * 117.49838 * 145.01832 * 17 16 6 31 31 H 1.08993 * 117.50087 * 252.50827 * 18 17 16 32 32 H 1.09007 * 117.51674 * 107.47880 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0056 5 8 4.1331 0.7078 0.0863 6 7 3.7930 2.8936 -0.1134 7 6 2.8464 4.0115 -0.0916 8 6 2.6447 4.4713 1.3293 9 1 3.1696 3.9803 2.1354 10 6 1.7903 5.5189 1.6001 11 7 1.1508 6.1166 0.6185 12 14 1.5408 6.0894 3.3613 13 1 2.3683 5.2587 4.2726 14 1 1.9467 7.5127 3.4828 15 1 0.1087 5.9500 3.7287 16 6 5.2284 3.1518 -0.2523 17 6 6.1221 1.9763 -0.6528 18 6 6.1635 2.5159 0.7783 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8935 -0.5138 0.8899 24 1 1.3880 2.1186 -0.0004 25 1 3.2420 4.8342 -0.6871 26 1 1.8923 3.6877 -0.5076 27 1 0.5500 6.8538 0.8090 28 1 5.4939 4.1386 -0.6315 29 1 5.6421 1.0110 -0.8134 30 1 6.9759 2.1896 -1.2959 31 1 7.0445 3.0840 1.0767 32 1 5.7107 1.9057 1.5599 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042249119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:01 Heat of formation + Delta-G solvation = -14.288945 kcal Electronic energy + Delta-G solvation = -14563.356636 eV Core-core repulsion = 12138.591000 eV Total energy + Delta-G solvation = -2424.765635 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.33979 -37.86672 -36.35145 -35.35919 -34.04413 -30.87378 -28.95217 -24.98317 -24.43966 -23.17927 -22.78797 -20.88732 -18.73199 -18.22387 -17.48642 -16.55723 -16.50486 -16.18103 -15.39099 -15.12695 -14.54945 -14.18535 -13.89275 -13.51966 -13.22730 -12.95476 -12.75008 -12.54776 -12.45577 -12.36193 -12.17205 -11.99349 -11.43198 -11.15930 -10.70024 -10.54055 -9.93523 -9.07514 -8.20386 -6.36465 1.38386 1.41985 1.52684 1.94304 2.21389 2.40333 3.05062 3.10636 3.24211 4.04458 4.15199 4.21062 4.26473 4.30399 4.55626 4.75811 4.86008 4.90949 4.96955 5.09200 5.10001 5.17900 5.26466 5.46013 5.66161 5.80331 5.91957 6.04591 6.24416 6.68291 7.11672 7.37173 7.75539 8.83124 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.011877 C = 0.008730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.225445 B = 2356.940624 C = 3206.506115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 N -0.745 5.745 4 C 0.699 3.301 5 O -0.630 6.630 6 N -0.597 5.597 7 C 0.258 3.742 8 C -0.544 4.544 9 H 0.044 0.956 10 C 0.024 3.976 11 N -0.917 5.917 12 Si 0.957 3.043 13 H -0.277 1.277 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.081 3.919 17 C -0.184 4.184 18 C -0.188 4.188 19 H 0.064 0.936 20 H 0.097 0.903 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.404 0.596 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.269 0.731 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 -6.552 -1.945 6.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.008 3.992 3 N -0.402 5.402 4 C 0.401 3.599 5 O -0.514 6.514 6 N -0.329 5.329 7 C 0.137 3.863 8 C -0.583 4.583 9 H 0.063 0.937 10 C -0.176 4.176 11 N -0.556 5.556 12 Si 0.782 3.218 13 H -0.202 1.202 14 H -0.202 1.202 15 H -0.200 1.200 16 C -0.024 4.024 17 C -0.222 4.222 18 C -0.226 4.226 19 H 0.083 0.917 20 H 0.116 0.884 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.241 0.759 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.135 -7.053 -1.948 7.404 hybrid contribution -0.516 0.929 0.985 1.449 sum 0.618 -6.123 -0.962 6.229 Atomic orbital electron populations 1.21950 0.92206 1.04251 1.02704 1.21228 0.95749 0.81128 1.01130 1.45534 1.05239 1.10021 1.79414 1.16123 0.83184 0.82897 0.77712 1.90633 1.54917 1.45034 1.60842 1.46795 1.06766 1.05016 1.74276 1.18993 0.87371 0.83865 0.96101 1.21670 1.26238 1.16843 0.93505 0.93735 1.25603 0.95019 0.95993 1.01011 1.70000 1.28968 1.23748 1.32918 0.85527 0.78003 0.78082 0.80143 1.20220 1.20212 1.20033 1.21620 0.77805 0.98256 1.04767 1.23760 1.01041 0.99991 0.97384 1.23123 1.02018 1.04334 0.93173 0.91678 0.88432 0.92373 0.92170 0.93055 0.75881 0.95743 0.95386 0.92198 0.84685 0.87021 0.86935 0.86837 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 10.03 71.98 0.72 -2.78 16 2 C 0.13 4.01 6.40 86.38 0.55 4.57 16 3 N -0.74 -28.79 5.43 -478.53 -2.60 -31.39 16 4 C 0.70 31.06 8.06 179.05 1.44 32.50 16 5 O -0.63 -29.38 12.09 -3.97 -0.05 -29.43 16 6 N -0.60 -26.67 2.82 -820.04 -2.31 -28.98 16 7 C 0.26 12.55 5.07 85.63 0.43 12.98 16 8 C -0.54 -28.89 9.39 25.60 0.24 -28.65 16 9 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 10 C 0.02 1.28 5.46 84.65 0.46 1.74 16 11 N -0.92 -49.85 13.29 21.45 0.28 -49.57 16 12 Si 0.96 42.21 29.54 68.60 2.03 44.24 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 C 0.08 3.18 6.62 44.99 0.30 3.48 16 17 C -0.18 -6.48 9.63 30.59 0.29 -6.18 16 18 C -0.19 -6.92 9.87 30.59 0.30 -6.62 16 19 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.40 15.91 6.15 -92.71 -0.57 15.34 16 25 H 0.02 1.25 8.03 -2.39 -0.02 1.23 16 26 H 0.03 1.38 6.21 -2.38 -0.01 1.37 16 27 H 0.27 13.78 8.31 -92.72 -0.77 13.01 16 28 H 0.14 4.85 8.09 -2.39 -0.02 4.83 16 29 H 0.11 4.55 5.22 -5.19 -0.03 4.53 16 30 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.06 2.73 7.59 -2.38 -0.02 2.71 16 Total: -1.00 -60.71 269.42 2.62 -58.09 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.52 Total: 26.02 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.75 Total: 11.03 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -4.63 Total: -109.94 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -60.71 2.62 -58.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042249119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.799 kcal (2) G-P(sol) polarization free energy of solvation -60.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds