Wall clock time and date at job start Mon Mar 30 2020 02:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47265 * 2 1 4 4 C 1.50693 * 109.47555 * 120.00362 * 2 1 3 5 5 N 1.34779 * 120.00162 * 300.00307 * 4 2 1 6 6 O 1.21282 * 120.00609 * 119.99609 * 4 2 1 7 7 N 1.46904 * 109.47185 * 240.00418 * 2 1 3 8 8 C 1.46904 * 111.00142 * 69.99846 * 7 2 1 9 9 C 1.50698 * 109.47006 * 69.85916 * 8 7 2 10 10 H 1.08002 * 120.00210 * 5.25128 * 9 8 7 11 11 C 1.37874 * 119.99964 * 185.24093 * 9 8 7 12 12 N 1.31517 * 120.00041 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99956 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46978 * 89.99732 * 13 11 9 15 15 H 1.48509 * 109.46878 * 209.99851 * 13 11 9 16 16 H 1.48497 * 109.47112 * 329.99513 * 13 11 9 17 17 C 1.46904 * 110.99901 * 306.04411 * 7 2 1 18 18 C 1.52999 * 117.50020 * 187.13387 * 17 7 2 19 19 C 1.52998 * 60.00110 * 252.51487 * 18 17 7 20 20 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46968 * 299.99741 * 1 2 3 22 22 H 1.09002 * 109.47172 * 59.99371 * 1 2 3 23 23 H 0.97002 * 119.99295 * 359.97438 * 5 4 2 24 24 H 0.96998 * 120.00595 * 180.02562 * 5 4 2 25 25 H 1.09001 * 109.47144 * 189.86316 * 8 7 2 26 26 H 1.08999 * 109.47003 * 309.86310 * 8 7 2 27 27 H 0.97005 * 119.99926 * 180.02562 * 12 11 9 28 28 H 1.08997 * 115.56015 * 332.83133 * 17 7 2 29 29 H 1.09001 * 117.49939 * 145.01826 * 18 17 7 30 30 H 1.09001 * 117.49905 * 0.02562 * 18 17 7 31 31 H 1.08994 * 117.49819 * 107.49076 * 19 18 17 32 32 H 1.09001 * 117.49919 * 252.51157 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7068 -0.2501 2.4545 6 8 2.7296 -1.6965 1.1191 7 7 2.0197 -0.6924 -1.1995 8 6 1.7529 0.0974 -2.4091 9 6 2.6347 1.3194 -2.4157 10 1 3.3831 1.4495 -1.6480 11 6 2.4861 2.2714 -3.4019 12 7 3.2560 3.3377 -3.4079 13 14 1.1913 2.0467 -4.7295 14 1 -0.0843 2.6649 -4.2865 15 1 1.6487 2.6994 -5.9826 16 1 0.9801 0.5975 -4.9747 17 6 1.4343 -2.0354 -1.3079 18 6 1.9681 -2.9518 -2.4108 19 6 0.5742 -2.3339 -2.5376 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.1494 0.5387 2.5435 24 1 2.0305 -0.7071 3.2465 25 1 1.9631 -0.5072 -3.2915 26 1 0.7070 0.4040 -2.4195 27 1 3.1511 4.0077 -4.1016 28 1 1.1431 -2.4990 -0.3654 29 1 2.0281 -4.0183 -2.1938 30 1 2.7539 -2.5583 -3.0556 31 1 0.4427 -1.5339 -3.2660 32 1 -0.2830 -2.9939 -2.4040 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042359570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:33 Heat of formation + Delta-G solvation = -26.333381 kcal Electronic energy + Delta-G solvation = -14810.995600 eV Core-core repulsion = 12385.707679 eV Total energy + Delta-G solvation = -2425.287921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09161 -39.09832 -35.67591 -34.79336 -34.22833 -31.31112 -28.71874 -25.63373 -24.08689 -23.11373 -21.91351 -20.08256 -19.10907 -18.27285 -17.69250 -16.90688 -16.33123 -16.19330 -15.49132 -15.17345 -14.68151 -14.34760 -13.84478 -13.72374 -13.46108 -13.07156 -12.62778 -12.60759 -12.33557 -12.12877 -11.86626 -11.64506 -11.24988 -11.17680 -10.76495 -10.67264 -10.52547 -8.77706 -8.27879 -6.31368 1.33910 1.37408 1.47543 1.74096 2.34344 2.53860 2.96939 3.06121 3.26547 4.00042 4.09651 4.11661 4.16653 4.32801 4.35259 4.61055 4.74710 4.78570 4.82968 5.00263 5.06728 5.14739 5.29064 5.30925 5.56008 5.95925 6.02972 6.29744 6.59427 6.65400 6.75256 7.32503 7.46428 8.88764 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.011643 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.807566 B = 2404.310300 C = 2892.925472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.065 3.935 3 H 0.098 0.902 4 C 0.524 3.476 5 N -0.834 5.834 6 O -0.571 6.571 7 N -0.504 5.504 8 C 0.177 3.823 9 C -0.518 4.518 10 H 0.033 0.967 11 C 0.014 3.986 12 N -0.946 5.946 13 Si 0.942 3.058 14 H -0.259 1.259 15 H -0.284 1.284 16 H -0.252 1.252 17 C 0.030 3.970 18 C -0.178 4.178 19 C -0.213 4.213 20 H 0.066 0.934 21 H 0.093 0.907 22 H 0.059 0.941 23 H 0.415 0.585 24 H 0.408 0.592 25 H 0.027 0.973 26 H 0.007 0.993 27 H 0.267 0.733 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 -7.498 7.746 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.047 4.047 3 H 0.116 0.884 4 C 0.308 3.692 5 N -0.400 5.400 6 O -0.449 6.449 7 N -0.225 5.225 8 C 0.051 3.949 9 C -0.556 4.556 10 H 0.052 0.948 11 C -0.184 4.184 12 N -0.586 5.586 13 Si 0.765 3.235 14 H -0.184 1.184 15 H -0.210 1.210 16 H -0.176 1.176 17 C -0.079 4.079 18 C -0.216 4.216 19 C -0.252 4.252 20 H 0.085 0.915 21 H 0.112 0.888 22 H 0.078 0.922 23 H 0.246 0.754 24 H 0.241 0.759 25 H 0.045 0.955 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.582 -7.975 7.455 14.526 hybrid contribution -0.761 0.717 -0.481 1.150 sum -10.343 -7.258 6.974 14.432 Atomic orbital electron populations 1.22323 0.93128 1.03146 1.04004 1.21584 0.95757 0.98650 0.88700 0.88404 1.20658 0.78926 0.83623 0.85951 1.43597 1.55603 1.34069 1.06724 1.90685 1.38812 1.28092 1.87359 1.61458 1.57265 1.01328 1.02461 1.20006 0.94333 0.91788 0.88819 1.21234 1.18413 1.04045 1.11934 0.94840 1.25779 0.98275 0.94398 0.99959 1.70050 1.41348 1.11436 1.35779 0.85792 0.79551 0.79630 0.78492 1.18407 1.21008 1.17577 1.22485 1.00645 0.91252 0.93531 1.23025 0.96742 0.99185 1.02640 1.23610 0.94964 1.04163 1.02419 0.91475 0.88810 0.92230 0.75360 0.75947 0.95541 0.97573 0.92404 0.86721 0.86912 0.90777 0.89771 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 8.57 71.98 0.62 -4.01 16 2 C 0.07 2.36 2.62 44.17 0.12 2.48 16 3 H 0.10 4.01 7.05 -2.38 -0.02 4.00 16 4 C 0.52 17.44 6.92 87.65 0.61 18.05 16 5 N -0.83 -17.71 8.77 -173.53 -1.52 -19.23 16 6 O -0.57 -23.76 15.71 -3.04 -0.05 -23.80 16 7 N -0.50 -21.73 4.36 -854.77 -3.72 -25.45 16 8 C 0.18 8.39 2.33 85.56 0.20 8.59 16 9 C -0.52 -29.74 8.88 25.60 0.23 -29.51 16 10 H 0.03 2.18 7.87 -2.91 -0.02 2.15 16 11 C 0.01 0.78 5.47 84.65 0.46 1.24 16 12 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 13 Si 0.94 43.10 27.37 68.60 1.88 44.98 16 14 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.25 -10.85 6.70 99.48 0.67 -10.18 16 17 C 0.03 1.10 3.75 44.91 0.17 1.27 16 18 C -0.18 -6.11 9.98 30.59 0.31 -5.80 16 19 C -0.21 -6.77 9.52 30.59 0.29 -6.47 16 20 H 0.07 1.73 6.78 -2.39 -0.02 1.72 16 21 H 0.09 1.86 7.56 -2.39 -0.02 1.84 16 22 H 0.06 1.83 6.52 -2.39 -0.02 1.81 16 23 H 0.42 6.23 8.25 -92.71 -0.76 5.46 16 24 H 0.41 7.19 8.93 -92.71 -0.83 6.36 16 25 H 0.03 1.30 5.39 -2.39 -0.01 1.29 16 26 H 0.01 0.30 5.22 -2.39 -0.01 0.29 16 27 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 28 H 0.12 4.01 6.31 -2.39 -0.02 4.00 16 29 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.07 2.87 7.74 -2.39 -0.02 2.85 16 31 H 0.08 2.98 5.90 -2.39 -0.01 2.96 16 32 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -72.57 257.20 -0.61 -73.18 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.48 Total: 22.65 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 2.99 Total: -14.17 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -4.95 Total: -102.83 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.98 kcal Total: -72.57 -0.61 -73.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.845 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds