Wall clock time and date at job start Mon Mar 30 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 C 1.50689 * 109.47615 * 120.00180 * 2 1 3 5 5 H 1.08006 * 120.00388 * 115.91501 * 4 2 1 6 6 C 1.37877 * 120.00387 * 295.91821 * 4 2 1 7 7 N 1.31517 * 119.99501 * 347.06618 * 6 4 2 8 8 Si 1.86798 * 120.00584 * 167.06033 * 6 4 2 9 9 H 1.48502 * 109.47271 * 270.00440 * 8 6 4 10 10 H 1.48496 * 109.47574 * 150.00177 * 8 6 4 11 11 H 1.48504 * 109.46814 * 30.00507 * 8 6 4 12 12 N 1.46902 * 109.47041 * 240.00507 * 2 1 3 13 13 C 1.47839 * 111.00070 * 194.83570 * 12 2 1 14 14 C 1.54903 * 104.79776 * 213.63079 * 13 12 2 15 15 C 1.55143 * 101.65021 * 37.07769 * 14 13 12 16 16 C 1.47444 * 111.00125 * 73.99300 * 12 2 1 17 17 H 1.09000 * 109.88961 * 242.66590 * 16 12 2 18 18 C 1.50701 * 109.88736 * 3.85519 * 16 12 2 19 19 N 1.34777 * 119.99807 * 244.97793 * 18 16 12 20 20 O 1.21278 * 120.00081 * 64.98151 * 18 16 12 21 21 H 1.09008 * 109.46860 * 288.82485 * 1 2 3 22 22 H 1.08997 * 109.47661 * 48.82499 * 1 2 3 23 23 H 1.08996 * 109.47302 * 168.82836 * 1 2 3 24 24 H 0.96992 * 120.00383 * 353.35164 * 7 6 4 25 25 H 1.08994 * 110.37660 * 332.47116 * 13 12 2 26 26 H 1.09009 * 110.37201 * 94.80460 * 13 12 2 27 27 H 1.08992 * 110.99747 * 278.98351 * 14 13 12 28 28 H 1.09008 * 111.02080 * 155.17540 * 14 13 12 29 29 H 1.09007 * 110.70047 * 205.96215 * 15 14 13 30 30 H 1.08990 * 110.70815 * 82.72850 * 15 14 13 31 31 H 0.97001 * 119.99943 * 0.02562 * 19 18 16 32 32 H 0.97008 * 119.99840 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5978 -1.6254 1.1326 6 6 1.7702 -0.1924 2.4809 7 7 1.3121 1.0345 2.6016 8 14 2.0656 -1.2331 4.0038 9 1 0.8317 -1.9914 4.3320 10 1 2.4229 -0.3516 5.1441 11 1 3.1769 -2.1837 3.7457 12 7 2.0196 -0.6924 -1.1995 13 6 3.4541 -1.0259 -1.0703 14 6 4.0190 -0.9069 -2.5078 15 6 3.2254 0.3079 -3.0567 16 6 1.8379 0.1412 -2.4020 17 1 1.1573 -0.3522 -3.0959 18 6 1.2893 1.4898 -2.0128 19 7 0.0592 1.8601 -2.4205 20 8 1.9548 2.2419 -1.3328 21 1 -0.3633 0.3316 0.9728 22 1 -0.3634 0.6765 -0.7735 23 1 -0.3634 -1.0081 -0.1991 24 1 1.2497 1.6078 1.8217 25 1 3.9503 -0.3170 -0.4076 26 1 3.5752 -2.0432 -0.6981 27 1 3.8066 -1.8057 -3.0865 28 1 5.0890 -0.6991 -2.4915 29 1 3.1475 0.2584 -4.1428 30 1 3.6888 1.2438 -2.7448 31 1 -0.4731 1.2584 -2.9641 32 1 -0.2937 2.7283 -2.1703 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246638.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:08 Heat of formation + Delta-G solvation = -23.942216 kcal Electronic energy + Delta-G solvation = -15259.263654 eV Core-core repulsion = 12834.079422 eV Total energy + Delta-G solvation = -2425.184233 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19102 -36.94572 -34.04035 -33.34044 -31.03148 -28.86937 -27.64117 -24.59079 -22.57827 -20.97040 -20.55018 -19.09203 -17.17975 -16.81441 -15.89922 -15.44189 -14.61752 -14.46129 -13.64169 -13.25841 -12.91328 -12.45351 -12.22265 -11.59593 -11.39675 -11.19081 -10.86477 -10.67534 -10.50808 -10.40556 -10.25877 -10.05402 -10.02322 -9.54046 -9.12027 -8.38281 -8.16842 -7.21822 -6.24553 -3.92666 3.06482 3.49038 3.51508 3.67980 3.93992 4.59413 4.92428 4.98768 5.17022 5.35748 5.47793 5.55882 5.74946 5.94794 6.11701 6.21418 6.37453 6.62500 6.65897 6.79748 6.89281 6.92839 7.12129 7.23801 7.57565 7.70388 7.81223 8.07324 8.44222 8.64319 8.71509 8.97783 9.75413 11.11600 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.034774 B = 0.012254 C = 0.010133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.002361 B = 2284.332693 C = 2762.665598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.153 3.847 3 H 0.048 0.952 4 C -0.591 4.591 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 1.064 2.936 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.289 1.289 12 N -0.496 5.496 13 C 0.061 3.939 14 C -0.132 4.132 15 C -0.127 4.127 16 C 0.051 3.949 17 H 0.085 0.915 18 C 0.513 3.487 19 N -0.858 5.858 20 O -0.529 6.529 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.039 0.961 24 H 0.273 0.727 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.397 0.603 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -1.804 -11.764 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.047 3.953 3 H 0.065 0.935 4 C -0.630 4.630 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.544 5.544 8 Si 0.893 3.107 9 H -0.215 1.215 10 H -0.213 1.213 11 H -0.216 1.216 12 N -0.222 5.222 13 C -0.066 4.066 14 C -0.170 4.170 15 C -0.166 4.166 16 C -0.060 4.060 17 H 0.103 0.897 18 C 0.298 3.702 19 N -0.422 5.422 20 O -0.404 6.404 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.225 0.775 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.063 -1.918 -9.705 9.893 hybrid contribution -0.040 0.716 -1.650 1.799 sum -0.103 -1.202 -11.354 11.418 Atomic orbital electron populations 1.22091 0.98572 0.99255 1.00505 1.20332 0.91847 0.96063 0.87046 0.93461 1.21934 1.38643 1.10915 0.91484 0.92756 1.25679 0.94332 0.97299 1.00906 1.70674 1.42969 1.06306 1.34469 0.83642 0.76320 0.75070 0.75669 1.21526 1.21336 1.21561 1.64219 1.16836 1.38296 1.02823 1.22822 0.88131 1.01446 0.94232 1.22772 0.99097 0.97386 0.97754 1.22735 0.94442 0.99994 0.99449 1.22648 0.97439 0.89548 0.96406 0.89726 1.21074 0.81301 0.88884 0.78920 1.44044 1.18747 1.22078 1.57336 1.90687 1.59125 1.54188 1.36444 0.92373 0.95305 0.94199 0.91573 0.92611 0.90790 0.91269 0.91306 0.91287 0.90623 0.77452 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.80 37.16 0.33 -3.24 16 2 C 0.15 4.00 1.18 -68.87 -0.08 3.92 16 3 H 0.05 1.40 3.91 -51.95 -0.20 1.19 16 4 C -0.59 -17.01 7.54 -34.45 -0.26 -17.27 16 5 H 0.05 1.56 6.62 -52.48 -0.35 1.21 16 6 C 0.02 0.66 5.02 -17.82 -0.09 0.57 16 7 N -0.91 -28.35 12.75 55.43 0.71 -27.65 16 8 Si 1.06 25.99 29.92 -169.99 -5.09 20.91 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.50 -10.90 5.02 -218.19 -1.10 -11.99 16 13 C 0.06 1.27 5.33 -2.30 -0.01 1.26 16 14 C -0.13 -2.07 7.08 -24.59 -0.17 -2.24 16 15 C -0.13 -2.02 6.43 -24.91 -0.16 -2.18 16 16 C 0.05 0.93 3.65 -67.87 -0.25 0.68 16 17 H 0.08 1.29 7.96 -51.93 -0.41 0.88 16 18 C 0.51 9.85 4.31 -10.98 -0.05 9.80 16 19 N -0.86 -12.27 7.14 31.22 0.22 -12.05 16 20 O -0.53 -12.69 14.72 5.56 0.08 -12.60 16 21 H 0.06 1.58 6.61 -51.92 -0.34 1.24 16 22 H 0.03 0.60 4.71 -51.93 -0.24 0.36 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.27 8.75 6.73 -40.82 -0.27 8.48 16 25 H 0.06 1.32 7.42 -51.93 -0.39 0.93 16 26 H 0.07 1.51 7.67 -51.92 -0.40 1.12 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.33 7.38 -51.93 -0.38 0.95 16 31 H 0.40 4.35 8.69 -40.82 -0.35 3.99 16 32 H 0.39 5.24 8.93 -40.82 -0.36 4.87 16 LS Contribution 249.39 15.07 3.76 3.76 Total: -1.00 -34.07 249.39 -6.36 -40.43 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.20 Total: 7.90 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.75 Total: -8.70 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.17 Total: -51.69 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.91 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.07 -6.36 -40.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246638.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.485 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds