Wall clock time and date at job start Mon Mar 30 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 5 5 H 1.08001 * 119.99930 * 119.99860 * 4 2 1 6 6 C 1.37871 * 119.99762 * 299.99926 * 4 2 1 7 7 N 1.31519 * 119.99631 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46925 * 90.00223 * 8 6 4 10 10 H 1.48497 * 109.47251 * 210.00352 * 8 6 4 11 11 H 1.48507 * 109.46917 * 330.00578 * 8 6 4 12 12 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 13 13 C 1.34777 * 119.99873 * 85.00531 * 12 2 1 14 14 O 1.21284 * 119.99754 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00137 * 179.97438 * 13 12 2 16 16 H 1.09006 * 110.36873 * 42.34632 * 15 13 12 17 17 C 1.54374 * 110.41193 * 279.99758 * 15 13 12 18 18 C 1.54263 * 105.06365 * 217.36636 * 17 15 13 19 19 C 1.54373 * 105.05515 * 0.02562 * 18 17 15 20 20 N 1.48555 * 110.41379 * 164.82445 * 15 13 12 21 21 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 24 24 H 0.97005 * 119.99726 * 179.97438 * 7 6 4 25 25 H 0.96995 * 120.00050 * 264.72646 * 12 2 1 26 26 H 1.09003 * 110.32831 * 336.26656 * 17 15 13 27 27 H 1.09004 * 110.32255 * 98.46845 * 17 15 13 28 28 H 1.09000 * 110.32117 * 118.89646 * 18 17 15 29 29 H 1.09001 * 110.32512 * 241.10229 * 18 17 15 30 30 H 1.09001 * 110.41287 * 142.63303 * 19 18 17 31 31 H 1.09002 * 110.41422 * 264.95310 * 19 18 17 32 32 H 1.00903 * 111.00015 * 277.81552 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8491 2.1772 1.4923 12 7 2.0182 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1585 -2.4116 15 6 2.6498 -0.7284 -3.5875 16 1 2.1921 -1.7142 -3.6702 17 6 4.1882 -0.8507 -3.5477 18 6 4.6442 -0.6497 -5.0076 19 6 3.3430 -0.4222 -5.8065 20 7 2.3698 0.0791 -4.8027 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.9039 -0.5278 4.4375 25 1 2.2527 -1.6308 -1.1518 26 1 4.6131 -0.0768 -2.9084 27 1 4.4803 -1.8389 -3.1924 28 1 5.2929 0.2228 -5.0849 29 1 5.1603 -1.5392 -5.3690 30 1 3.5015 0.3215 -6.5875 31 1 2.9945 -1.3595 -6.2405 32 1 1.4213 -0.0591 -5.1180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:38 Heat of formation + Delta-G solvation = -33.332308 kcal Electronic energy + Delta-G solvation = -14339.236918 eV Core-core repulsion = 11913.645500 eV Total energy + Delta-G solvation = -2425.591418 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51762 -37.38486 -34.84938 -32.35850 -30.44326 -30.26053 -28.56052 -25.16905 -22.99987 -20.99466 -20.54474 -19.42976 -17.37721 -16.82486 -16.09895 -15.43802 -14.87939 -14.06136 -13.76011 -13.48647 -12.93411 -12.84519 -12.63879 -12.18425 -12.16259 -11.74982 -11.52674 -11.35441 -11.10112 -10.79310 -10.64195 -10.16343 -9.66710 -9.20365 -9.08587 -8.73222 -8.47254 -8.08219 -6.19295 -4.21483 3.24816 3.29463 3.37259 3.42831 3.75427 4.33802 4.46684 4.66985 4.80369 4.97388 5.13919 5.16326 5.39953 5.48972 5.62133 5.77051 5.81178 6.01294 6.13729 6.34035 6.40501 6.59115 6.65961 6.89938 7.21831 7.27785 7.35395 7.56299 8.20878 8.58583 8.78818 9.04601 9.42311 10.92912 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057611 B = 0.007503 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.897894 B = 3730.983308 C = 3987.965905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.705 5.705 13 C 0.510 3.490 14 O -0.535 6.535 15 C 0.047 3.953 16 H 0.066 0.934 17 C -0.113 4.113 18 C -0.123 4.123 19 C 0.036 3.964 20 N -0.640 5.640 21 H 0.035 0.965 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.267 0.733 25 H 0.393 0.607 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -2.561 -15.004 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.354 5.354 13 C 0.293 3.707 14 O -0.411 6.411 15 C -0.067 4.067 16 H 0.084 0.916 17 C -0.151 4.151 18 C -0.161 4.161 19 C -0.093 4.093 20 N -0.270 5.270 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.226 0.774 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.778 -1.070 -14.621 14.767 hybrid contribution -0.917 -0.707 0.087 1.162 sum 0.860 -1.777 -14.533 14.667 Atomic orbital electron populations 1.22444 0.99416 1.00742 0.99263 1.19072 0.90049 0.94684 0.82841 0.93455 1.21055 1.33168 1.14369 0.88578 0.90231 1.24836 0.95517 0.96710 0.95530 1.69874 1.45000 1.40167 0.98027 0.86872 0.80491 0.83661 0.77453 1.20338 1.22155 1.18617 1.46192 1.65551 1.13812 1.09833 1.20176 0.78619 0.87595 0.84292 1.90653 1.49841 1.15767 1.84883 1.22475 0.97396 0.95241 0.91552 0.91586 1.22226 0.92530 1.02834 0.97538 1.22291 0.97232 1.01945 0.94612 1.22920 0.92883 0.98393 0.95133 1.63340 1.07503 1.53557 1.02571 0.94587 0.92900 0.93505 0.92319 0.77397 0.90289 0.90505 0.90846 0.91238 0.90017 0.94309 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.96 37.16 0.33 -3.33 16 2 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 3 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 4 C -0.53 -14.59 9.31 -34.44 -0.32 -14.91 16 5 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 8 Si 0.89 22.10 24.37 -169.99 -4.14 17.96 16 9 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 11 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 12 N -0.70 -14.26 5.07 -54.93 -0.28 -14.54 16 13 C 0.51 9.98 6.98 -10.99 -0.08 9.90 16 14 O -0.53 -12.75 16.22 5.55 0.09 -12.66 16 15 C 0.05 0.68 3.58 -67.23 -0.24 0.44 16 16 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.11 -1.44 6.54 -25.35 -0.17 -1.61 16 18 C -0.12 -1.28 7.00 -25.35 -0.18 -1.46 16 19 C 0.04 0.38 7.47 -2.20 -0.02 0.36 16 20 N -0.64 -8.94 6.86 -103.98 -0.71 -9.65 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 23 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.39 6.95 8.54 -40.82 -0.35 6.60 16 26 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.34 4.25 8.92 -39.29 -0.35 3.90 16 LS Contribution 261.07 15.07 3.93 3.93 Total: -1.00 -32.40 261.07 -5.85 -38.25 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.60 Total: 5.46 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.91 Total: -2.88 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.22 Total: -50.07 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.40 -5.85 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.922 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds