Wall clock time and date at job start Mon Mar 30 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 5 5 H 1.08001 * 119.99930 * 119.99860 * 4 2 1 6 6 C 1.37871 * 119.99762 * 299.99926 * 4 2 1 7 7 N 1.31519 * 119.99631 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00377 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46925 * 90.00223 * 8 6 4 10 10 H 1.48497 * 109.47251 * 210.00352 * 8 6 4 11 11 H 1.48507 * 109.46917 * 330.00578 * 8 6 4 12 12 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 13 13 C 1.34777 * 119.99873 * 85.00531 * 12 2 1 14 14 O 1.21284 * 119.99754 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00137 * 179.97438 * 13 12 2 16 16 H 1.09006 * 110.36873 * 42.34632 * 15 13 12 17 17 C 1.54374 * 110.41193 * 279.99758 * 15 13 12 18 18 C 1.54263 * 105.06365 * 217.36636 * 17 15 13 19 19 C 1.54373 * 105.05515 * 0.02562 * 18 17 15 20 20 N 1.48555 * 110.41379 * 164.82445 * 15 13 12 21 21 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 24 24 H 0.97005 * 119.99726 * 179.97438 * 7 6 4 25 25 H 0.96995 * 120.00050 * 264.72646 * 12 2 1 26 26 H 1.09003 * 110.32831 * 336.26656 * 17 15 13 27 27 H 1.09004 * 110.32255 * 98.46845 * 17 15 13 28 28 H 1.09000 * 110.32117 * 118.89646 * 18 17 15 29 29 H 1.09001 * 110.32512 * 241.10229 * 18 17 15 30 30 H 1.09001 * 110.41287 * 142.63303 * 19 18 17 31 31 H 1.09002 * 110.41422 * 264.95310 * 19 18 17 32 32 H 1.00903 * 111.00015 * 277.81552 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8491 2.1772 1.4923 12 7 2.0182 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1585 -2.4116 15 6 2.6498 -0.7284 -3.5875 16 1 2.1921 -1.7142 -3.6702 17 6 4.1882 -0.8507 -3.5477 18 6 4.6442 -0.6497 -5.0076 19 6 3.3430 -0.4222 -5.8065 20 7 2.3698 0.0791 -4.8027 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.9039 -0.5278 4.4375 25 1 2.2527 -1.6308 -1.1518 26 1 4.6131 -0.0768 -2.9084 27 1 4.4803 -1.8389 -3.1924 28 1 5.2929 0.2228 -5.0849 29 1 5.1603 -1.5392 -5.3690 30 1 3.5015 0.3215 -6.5875 31 1 2.9945 -1.3595 -6.2405 32 1 1.4213 -0.0591 -5.1180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:38 Heat of formation + Delta-G solvation = -59.885382 kcal Electronic energy + Delta-G solvation = -14340.388345 eV Core-core repulsion = 11913.645500 eV Total energy + Delta-G solvation = -2426.742845 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94152 -38.63025 -36.70804 -34.39226 -32.11792 -31.25047 -29.79974 -27.23217 -24.40761 -22.26928 -21.81133 -21.02760 -19.10231 -17.89197 -17.84762 -17.23887 -16.34262 -15.62398 -15.37008 -14.86589 -14.64145 -14.30187 -14.11984 -13.72535 -13.47712 -13.23515 -13.06741 -12.80469 -12.49155 -12.18631 -12.14129 -11.64637 -11.53521 -11.28891 -10.87960 -10.62616 -9.85568 -9.50446 -8.39107 -6.44665 1.25962 1.34647 1.44380 1.77542 2.25399 2.34606 2.96997 3.40422 3.68826 3.72968 4.03243 4.18367 4.29142 4.44755 4.54381 4.58682 4.70678 4.73488 4.91696 4.99000 5.01057 5.11339 5.21703 5.31144 5.42570 5.66073 5.73981 6.14743 6.33888 6.56894 6.92387 7.19463 7.50536 8.76073 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057611 B = 0.007503 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.897894 B = 3730.983308 C = 3987.965905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.241 3.759 3 H 0.017 0.983 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.938 3.062 9 H -0.258 1.258 10 H -0.291 1.291 11 H -0.266 1.266 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.582 6.582 15 C 0.055 3.945 16 H 0.098 0.902 17 C -0.115 4.115 18 C -0.119 4.119 19 C 0.038 3.962 20 N -0.668 5.668 21 H 0.043 0.957 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.271 0.729 25 H 0.407 0.593 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -3.303 -16.777 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.136 3.864 3 H 0.035 0.965 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.170 4.170 7 N -0.572 5.572 8 Si 0.765 3.235 9 H -0.184 1.184 10 H -0.218 1.218 11 H -0.191 1.191 12 N -0.352 5.352 13 C 0.293 3.707 14 O -0.461 6.461 15 C -0.058 4.058 16 H 0.116 0.884 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.090 4.090 20 N -0.299 5.299 21 H 0.062 0.938 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.242 0.758 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.425 -1.847 -16.422 16.587 hybrid contribution -0.735 -0.499 0.598 1.070 sum 0.690 -2.345 -15.824 16.012 Atomic orbital electron populations 1.22329 0.97832 1.01713 0.99315 1.18734 0.91215 0.93021 0.83395 0.96489 1.21260 1.32337 1.13588 0.89860 0.92316 1.25538 0.96838 0.99251 0.95385 1.69973 1.46655 1.41894 0.98634 0.86023 0.79912 0.80437 0.77111 1.18395 1.21819 1.19127 1.46038 1.65602 1.14386 1.09143 1.21139 0.77160 0.87177 0.85254 1.90624 1.51800 1.18015 1.85707 1.22426 0.98408 0.95731 0.89214 0.88407 1.22285 0.91129 1.03062 0.98893 1.22324 0.97403 1.03126 0.92821 1.23013 0.91829 0.99763 0.94408 1.63277 1.08728 1.54583 1.03303 0.93773 0.91438 0.94147 0.92020 0.75823 0.93348 0.88231 0.91454 0.88300 0.89299 0.91741 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.83 8.96 71.98 0.65 -6.19 16 2 C 0.24 11.74 2.15 44.24 0.10 11.84 16 3 H 0.02 0.94 6.63 -2.39 -0.02 0.93 16 4 C -0.53 -29.31 9.31 25.60 0.24 -29.07 16 5 H 0.06 3.41 7.98 -2.91 -0.02 3.38 16 6 C 0.03 1.69 5.45 84.65 0.46 2.15 16 7 N -0.93 -56.12 13.96 21.45 0.30 -55.82 16 8 Si 0.94 45.45 24.37 68.60 1.67 47.12 16 9 H -0.26 -11.70 6.87 99.48 0.68 -11.02 16 10 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.27 -13.03 6.53 99.48 0.65 -12.38 16 12 N -0.70 -27.96 5.07 -446.09 -2.26 -30.22 16 13 C 0.51 19.48 6.98 87.66 0.61 20.09 16 14 O -0.58 -27.88 16.22 -3.04 -0.05 -27.93 16 15 C 0.06 1.49 3.58 44.31 0.16 1.65 16 16 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 17 C -0.12 -2.71 6.54 31.49 0.21 -2.50 16 18 C -0.12 -2.12 7.00 31.49 0.22 -1.90 16 19 C 0.04 0.68 7.47 86.45 0.65 1.33 16 20 N -0.67 -17.25 6.86 -482.88 -3.31 -20.57 16 21 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 23 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 24 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 25 H 0.41 13.92 8.54 -92.71 -0.79 13.12 16 26 H 0.05 1.42 7.85 -2.39 -0.02 1.41 16 27 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.35 7.92 8.92 -89.69 -0.80 7.12 16 Total: -1.00 -70.21 261.07 -0.91 -71.13 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.54 Total: 18.90 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 3.28 Total: -2.61 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -5.27 Total: -106.61 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Total: -70.21 -0.91 -71.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.241 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds