Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21287 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.90616 * 318.89742 * 15 13 12 17 17 C 1.53988 * 109.91556 * 80.00233 * 15 13 12 18 18 C 1.54596 * 105.14065 * 120.57750 * 17 15 13 19 19 C 1.54946 * 102.92148 * 21.95815 * 18 17 15 20 20 N 1.47903 * 109.91514 * 197.59211 * 15 13 12 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 25 25 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 26 26 H 1.08998 * 110.31077 * 239.49195 * 17 15 13 27 27 H 1.09000 * 110.30921 * 1.56073 * 17 15 13 28 28 H 1.09001 * 110.72482 * 140.31013 * 18 17 15 29 29 H 1.08994 * 110.72502 * 263.59697 * 18 17 15 30 30 H 1.08999 * 110.66442 * 81.01838 * 19 18 17 31 31 H 1.08999 * 110.66544 * 203.98272 * 19 18 17 32 32 H 1.00893 * 111.00230 * 335.82636 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6498 -0.7285 -3.5875 16 1 3.4700 -1.3954 -3.3219 17 6 1.5066 -1.5338 -4.2324 18 6 1.3667 -0.9624 -5.6620 19 6 2.7517 -0.3150 -5.9135 20 7 3.1033 0.2600 -4.5899 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.7095 1.1617 3.4844 25 1 2.2490 -1.6317 -1.1527 26 1 1.7645 -2.5921 -4.2715 27 1 0.5814 -1.3909 -3.6740 28 1 1.1782 -1.7609 -6.3798 29 1 0.5771 -0.2121 -5.7020 30 1 3.4804 -1.0689 -6.2113 31 1 2.6791 0.4676 -6.6688 32 1 2.6498 1.1505 -4.4505 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = -46.438620 kcal Electronic energy + Delta-G solvation = -14338.787408 eV Core-core repulsion = 11912.627659 eV Total energy + Delta-G solvation = -2426.159750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.66402 -37.23505 -34.76276 -32.42716 -29.93295 -29.82109 -28.10402 -25.26680 -22.76455 -21.27989 -20.52438 -19.31204 -17.64400 -16.05142 -15.67583 -15.34548 -14.84997 -13.88273 -13.81158 -13.68325 -13.33709 -12.59018 -12.40687 -11.82968 -11.58636 -11.37278 -11.16229 -11.09223 -10.94441 -10.84177 -10.66582 -10.31164 -10.25130 -9.06774 -9.01913 -8.57923 -8.56291 -7.93795 -6.13130 -4.22373 3.23536 3.29640 3.31868 3.34673 3.98567 4.33389 4.42628 4.73515 4.88412 5.08559 5.19281 5.38416 5.44685 5.56069 5.76306 5.80458 5.86894 5.97332 6.16768 6.75859 6.82302 6.93311 7.13103 7.40946 7.51794 7.54518 7.68616 7.90095 8.13606 8.64370 8.76620 9.08863 9.45215 10.93035 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063363 B = 0.006785 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.792884 B = 4125.751383 C = 4210.866039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.704 5.704 13 C 0.501 3.499 14 O -0.555 6.555 15 C 0.051 3.949 16 H 0.101 0.899 17 C -0.139 4.139 18 C -0.156 4.156 19 C 0.042 3.958 20 N -0.660 5.660 21 H 0.090 0.910 22 H 0.013 0.987 23 H 0.026 0.974 24 H 0.264 0.736 25 H 0.389 0.611 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 -5.773 -12.181 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.351 5.351 13 C 0.285 3.715 14 O -0.434 6.434 15 C -0.063 4.063 16 H 0.119 0.881 17 C -0.179 4.179 18 C -0.196 4.196 19 C -0.088 4.088 20 N -0.292 5.292 21 H 0.109 0.891 22 H 0.032 0.968 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.222 0.778 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.534 -4.943 -12.015 13.082 hybrid contribution -0.642 -0.876 0.923 1.425 sum 0.892 -5.819 -11.092 12.557 Atomic orbital electron populations 1.22074 0.98490 0.99075 1.00867 1.18768 0.90999 0.94057 0.80062 0.93336 1.21258 1.32364 1.13220 0.90300 0.91976 1.24900 0.94804 0.94963 0.99113 1.69917 1.35970 1.22476 1.23793 0.86375 0.78592 0.79527 0.82502 1.19719 1.20840 1.20879 1.46490 1.64689 1.13557 1.10373 1.20472 0.78573 0.87511 0.84992 1.90623 1.51842 1.16107 1.84835 1.22434 0.97160 0.94483 0.92184 0.88077 1.22729 0.99089 1.00069 0.96013 1.23116 0.99080 1.00824 0.96530 1.23134 0.94512 0.99020 0.92100 1.62798 1.59615 1.05940 1.00882 0.89108 0.96782 0.95474 0.92618 0.77820 0.90534 0.90848 0.90831 0.91360 0.90301 0.90728 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.59 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.70 -14.80 5.07 -54.93 -0.28 -15.08 16 13 C 0.50 10.13 6.83 -10.99 -0.08 10.06 16 14 O -0.55 -13.35 15.25 5.55 0.08 -13.27 16 15 C 0.05 0.79 3.81 -67.80 -0.26 0.53 16 16 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 17 C -0.14 -1.78 6.56 -25.38 -0.17 -1.94 16 18 C -0.16 -1.73 7.06 -24.87 -0.18 -1.90 16 19 C 0.04 0.48 7.55 -1.89 -0.01 0.46 16 20 N -0.66 -9.97 7.39 -104.34 -0.77 -10.74 16 21 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.39 7.07 8.54 -40.82 -0.35 6.73 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.05 7.68 -51.93 -0.40 0.65 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.35 5.93 7.31 -39.30 -0.29 5.64 16 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -30.21 265.91 -6.93 -37.14 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.67 Total: 9.09 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.92 Total: -2.39 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.42 Total: -50.28 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.21 -6.93 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.298 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds