Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37875 * 120.00221 * 300.00211 * 4 2 1 7 7 N 1.31519 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47366 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47271 * 119.99753 * 8 6 4 11 11 H 1.48496 * 109.47166 * 239.99582 * 8 6 4 12 12 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 13 13 C 1.34777 * 120.00075 * 84.99755 * 12 2 1 14 14 O 1.21287 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.90616 * 318.89742 * 15 13 12 17 17 C 1.53988 * 109.91556 * 80.00233 * 15 13 12 18 18 C 1.54596 * 105.14065 * 120.57750 * 17 15 13 19 19 C 1.54946 * 102.92148 * 21.95815 * 18 17 15 20 20 N 1.47903 * 109.91514 * 197.59211 * 15 13 12 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 0.96997 * 119.99545 * 180.02562 * 7 6 4 25 25 H 0.96997 * 120.00274 * 264.99726 * 12 2 1 26 26 H 1.08998 * 110.31077 * 239.49195 * 17 15 13 27 27 H 1.09000 * 110.30921 * 1.56073 * 17 15 13 28 28 H 1.09001 * 110.72482 * 140.31013 * 18 17 15 29 29 H 1.08994 * 110.72502 * 263.59697 * 18 17 15 30 30 H 1.08999 * 110.66442 * 81.01838 * 19 18 17 31 31 H 1.08999 * 110.66544 * 203.98272 * 19 18 17 32 32 H 1.00893 * 111.00230 * 335.82636 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1204 4.0078 9 1 3.1455 -2.2877 3.6037 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0183 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6498 -0.7285 -3.5875 16 1 3.4700 -1.3954 -3.3219 17 6 1.5066 -1.5338 -4.2324 18 6 1.3667 -0.9624 -5.6620 19 6 2.7517 -0.3150 -5.9135 20 7 3.1033 0.2600 -4.5899 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.7095 1.1617 3.4844 25 1 2.2490 -1.6317 -1.1527 26 1 1.7645 -2.5921 -4.2715 27 1 0.5814 -1.3909 -3.6740 28 1 1.1782 -1.7609 -6.3798 29 1 0.5771 -0.2121 -5.7020 30 1 3.4804 -1.0689 -6.2113 31 1 2.6791 0.4676 -6.6688 32 1 2.6498 1.1505 -4.4505 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = -69.726756 kcal Electronic energy + Delta-G solvation = -14339.797258 eV Core-core repulsion = 11912.627659 eV Total energy + Delta-G solvation = -2427.169599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.13842 -38.57765 -36.67439 -34.37656 -31.55524 -30.86950 -29.58809 -27.36554 -24.24383 -22.38124 -22.09749 -20.95025 -19.20375 -17.86557 -17.31378 -16.58917 -16.54769 -15.53668 -15.26443 -14.84038 -14.67007 -14.35132 -14.04717 -13.67635 -13.00720 -12.93648 -12.77424 -12.63147 -12.42299 -12.29548 -12.12874 -12.05243 -11.71450 -11.12468 -10.72628 -10.58401 -9.82149 -9.68075 -8.19536 -6.37366 1.44042 1.44963 1.57308 1.71908 2.32522 2.55133 3.11093 3.27267 3.69879 3.84652 3.98976 4.18403 4.46721 4.54477 4.71407 4.78197 4.87386 4.91621 4.96919 5.02868 5.06022 5.24761 5.39448 5.58061 5.63482 5.74785 5.88598 6.06886 6.25749 6.70657 6.90839 7.29719 7.49257 8.87241 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063363 B = 0.006785 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.792884 B = 4125.751383 C = 4210.866039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.700 5.700 13 C 0.495 3.505 14 O -0.599 6.599 15 C 0.060 3.940 16 H 0.121 0.879 17 C -0.137 4.137 18 C -0.151 4.151 19 C 0.042 3.958 20 N -0.676 5.676 21 H 0.066 0.934 22 H 0.010 0.990 23 H 0.042 0.958 24 H 0.266 0.734 25 H 0.406 0.594 26 H 0.107 0.893 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -8.134 -13.073 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.348 5.348 13 C 0.282 3.718 14 O -0.481 6.481 15 C -0.053 4.053 16 H 0.139 0.861 17 C -0.176 4.176 18 C -0.190 4.190 19 C -0.087 4.087 20 N -0.307 5.307 21 H 0.085 0.915 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.241 0.759 26 H 0.126 0.874 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.301 -7.353 -12.943 15.063 hybrid contribution -0.872 -0.088 1.144 1.441 sum 1.429 -7.441 -11.799 14.023 Atomic orbital electron populations 1.21884 0.98223 0.99514 0.99484 1.18367 0.91181 0.91879 0.82055 0.98589 1.21581 1.32571 1.13584 0.90751 0.90746 1.25838 0.94837 0.95590 1.02454 1.70066 1.37080 1.23985 1.24613 0.85250 0.78103 0.78500 0.78203 1.18267 1.20981 1.20325 1.46238 1.64792 1.14239 1.09528 1.21420 0.77303 0.87107 0.85978 1.90599 1.53543 1.18351 1.85636 1.22487 0.98601 0.94405 0.89816 0.86134 1.22771 0.96992 1.01447 0.96412 1.23103 0.98484 1.01352 0.96049 1.23294 0.95086 0.99833 0.90447 1.62890 1.59760 1.05474 1.02609 0.91487 0.97099 0.93912 0.92514 0.75874 0.87442 0.92777 0.87824 0.92572 0.88388 0.89401 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 14.17 2.56 44.24 0.11 14.29 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 8 Si 0.98 42.12 29.54 68.60 2.03 44.15 16 9 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 12 N -0.70 -29.42 5.07 -446.09 -2.26 -31.68 16 13 C 0.50 20.17 6.83 87.66 0.60 20.77 16 14 O -0.60 -29.90 15.25 -3.05 -0.05 -29.94 16 15 C 0.06 1.75 3.81 44.31 0.17 1.92 16 16 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 17 C -0.14 -3.12 6.56 31.47 0.21 -2.92 16 18 C -0.15 -2.89 7.06 31.80 0.22 -2.66 16 19 C 0.04 0.83 7.55 86.65 0.65 1.49 16 20 N -0.68 -19.52 7.39 -484.01 -3.57 -23.10 16 21 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 22 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.41 14.23 8.54 -92.71 -0.79 13.44 16 26 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.46 7.68 -2.39 -0.02 1.44 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.34 11.45 7.31 -89.70 -0.66 10.80 16 Total: -1.00 -66.84 265.91 -0.63 -67.47 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.33 Total: 27.15 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 3.31 Total: -1.06 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -5.59 Total: -107.76 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.84 -0.63 -67.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.253 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds