Wall clock time and date at job start Mon Mar 30 2020 02:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.90302 * 318.89270 * 15 13 12 17 17 C 1.53985 * 109.91758 * 79.99988 * 15 13 12 18 18 C 1.54601 * 105.13749 * 120.58010 * 17 15 13 19 19 C 1.54935 * 102.92385 * 21.95356 * 18 17 15 20 20 N 1.47907 * 109.91396 * 197.59324 * 15 13 12 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 26 26 H 1.08997 * 110.31106 * 239.49139 * 17 15 13 27 27 H 1.08999 * 110.31386 * 1.56326 * 17 15 13 28 28 H 1.09000 * 110.72781 * 140.31749 * 18 17 15 29 29 H 1.09005 * 110.71904 * 263.59691 * 18 17 15 30 30 H 1.08996 * 110.66395 * 81.02326 * 19 18 17 31 31 H 1.08998 * 110.66716 * 203.98846 * 19 18 17 32 32 H 1.00896 * 110.99919 * 335.82535 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 1 2.2045 -1.7212 3.6510 17 6 4.1845 -0.8440 3.5361 18 6 4.6874 -0.1071 4.7987 19 6 3.4508 -0.1347 5.7318 20 7 2.3141 0.0569 4.7952 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7088 1.1611 -3.4845 25 1 2.2490 -1.6316 1.1527 26 1 4.4862 -1.8910 3.5639 27 1 4.5703 -0.3635 2.6370 28 1 5.5233 -0.6416 5.2501 29 1 4.9679 0.9190 4.5604 30 1 3.3733 -1.0962 6.2392 31 1 3.4971 0.6785 6.4560 32 1 2.1920 1.0327 4.5695 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392245.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:47 Heat of formation + Delta-G solvation = -69.708766 kcal Electronic energy + Delta-G solvation = -14333.986465 eV Core-core repulsion = 11906.817646 eV Total energy + Delta-G solvation = -2427.168819 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13660 -38.58053 -36.67176 -34.37610 -31.56200 -30.86739 -29.57219 -27.36345 -24.26533 -22.38263 -22.04624 -20.98039 -19.22790 -17.83283 -17.26216 -16.62613 -16.57103 -15.58746 -15.22303 -14.80424 -14.66833 -14.38951 -14.05355 -13.64037 -13.00079 -12.91862 -12.80175 -12.62930 -12.40557 -12.28446 -12.15940 -12.04712 -11.71735 -11.14053 -10.72047 -10.58264 -9.81790 -9.68589 -8.19257 -6.37329 1.44451 1.45000 1.56026 1.72007 2.31856 2.55397 3.10978 3.27382 3.69666 3.84529 3.99335 4.18263 4.46430 4.53939 4.71951 4.78139 4.89773 4.91783 4.96866 5.02906 5.06843 5.24481 5.39561 5.57867 5.64438 5.73219 5.88913 6.06922 6.25432 6.70398 6.90895 7.29641 7.49272 8.87249 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054616 B = 0.007142 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.545553 B = 3919.543239 C = 4221.576471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.277 1.277 10 H -0.258 1.258 11 H -0.284 1.284 12 N -0.700 5.700 13 C 0.495 3.505 14 O -0.599 6.599 15 C 0.061 3.939 16 H 0.123 0.877 17 C -0.138 4.138 18 C -0.151 4.151 19 C 0.043 3.957 20 N -0.675 5.675 21 H 0.067 0.933 22 H 0.041 0.959 23 H 0.010 0.990 24 H 0.266 0.734 25 H 0.406 0.594 26 H 0.107 0.893 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -6.861 11.792 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.203 1.203 10 H -0.182 1.182 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.282 3.718 14 O -0.481 6.481 15 C -0.053 4.053 16 H 0.141 0.859 17 C -0.178 4.178 18 C -0.190 4.190 19 C -0.086 4.086 20 N -0.306 5.306 21 H 0.086 0.914 22 H 0.060 0.940 23 H 0.029 0.971 24 H 0.075 0.925 25 H 0.241 0.759 26 H 0.126 0.874 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.033 -6.394 11.977 14.857 hybrid contribution 0.743 0.323 -1.564 1.762 sum 6.776 -6.071 10.412 13.827 Atomic orbital electron populations 1.21900 0.98341 0.99523 0.99505 1.18354 0.91121 0.91865 0.82044 0.98555 1.21550 1.32658 1.13641 0.90727 0.90692 1.25842 0.94813 0.95598 1.02447 1.70061 1.36937 1.24028 1.24668 0.85308 0.77747 0.79216 0.77845 1.20326 1.18234 1.20942 1.46239 1.64667 1.14240 1.09661 1.21424 0.77157 0.87206 0.86029 1.90598 1.53434 1.18486 1.85609 1.22488 0.96653 0.98935 0.87176 0.85939 1.22777 0.92401 1.03523 0.99052 1.23106 1.00130 1.00493 0.95297 1.23290 0.86566 1.03808 0.94955 1.62904 1.41954 1.15593 1.10133 0.91438 0.93975 0.97097 0.92510 0.75870 0.87440 0.93016 0.87843 0.92668 0.88308 0.89381 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 2 C 0.27 14.23 2.56 44.24 0.11 14.34 16 3 H 0.00 -0.22 7.58 -2.38 -0.02 -0.23 16 4 C -0.55 -29.12 8.73 25.60 0.22 -28.89 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 8 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 9 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 12 N -0.70 -29.42 5.07 -446.09 -2.26 -31.68 16 13 C 0.50 20.17 6.83 87.66 0.60 20.77 16 14 O -0.60 -29.90 15.25 -3.04 -0.05 -29.94 16 15 C 0.06 1.77 3.81 44.31 0.17 1.94 16 16 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 17 C -0.14 -3.25 6.56 31.47 0.21 -3.04 16 18 C -0.15 -2.97 7.06 31.80 0.22 -2.75 16 19 C 0.04 0.84 7.55 86.65 0.65 1.50 16 20 N -0.67 -19.33 7.39 -484.02 -3.58 -22.91 16 21 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 22 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.41 14.22 8.54 -92.71 -0.79 13.43 16 26 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.47 7.68 -2.39 -0.02 1.45 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.34 11.40 7.31 -89.70 -0.66 10.75 16 Total: -1.00 -66.60 265.91 -0.63 -67.24 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.33 Total: 27.55 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 3.31 Total: -1.28 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -5.59 Total: -107.50 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -66.60 -0.63 -67.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392245.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.470 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds