Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.34771 * 120.00694 * 84.99510 * 12 2 1 14 14 O 1.21290 * 119.99507 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00516 * 180.02562 * 13 12 2 16 16 N 1.46896 * 109.46896 * 180.02562 * 15 13 12 17 17 C 1.46910 * 110.99717 * 179.97438 * 16 15 13 18 18 C 1.53002 * 117.49718 * 223.74915 * 17 16 15 19 19 C 1.52999 * 117.49691 * 155.08933 * 17 16 15 20 20 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 21 21 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 22 22 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 0.97006 * 119.99940 * 265.00592 * 12 2 1 25 25 H 1.09003 * 109.46738 * 300.00359 * 15 13 12 26 26 H 1.08994 * 109.46445 * 60.00413 * 15 13 12 27 27 H 1.00891 * 111.00490 * 303.95453 * 16 15 13 28 28 H 1.08997 * 115.54599 * 9.41805 * 17 16 15 29 29 H 1.08999 * 117.50005 * 359.97438 * 18 17 16 30 30 H 1.08999 * 117.49619 * 145.02081 * 18 17 16 31 31 H 1.09003 * 117.49312 * 214.97909 * 19 17 16 32 32 H 1.08997 * 117.50019 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 7 2.0183 -0.6904 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5879 16 7 2.6988 0.2156 -4.7121 17 6 3.1852 -0.4433 -5.9317 18 6 4.2117 0.3099 -6.7802 19 6 2.7706 0.1614 -7.2746 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.7006 1.1552 3.4844 24 1 2.2490 -1.6317 -1.1528 25 1 3.6480 -1.1211 -3.3987 26 1 1.9759 -1.5503 -3.8327 27 1 1.7978 0.6425 -4.8662 28 1 3.2776 -1.5279 -5.8751 29 1 4.5258 1.2945 -6.4337 30 1 4.9792 -0.2793 -7.2821 31 1 2.5907 -0.5255 -8.1016 32 1 2.1367 1.0478 -7.2532 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392495.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = -38.141920 kcal Electronic energy + Delta-G solvation = -13798.054297 eV Core-core repulsion = 11372.254319 eV Total energy + Delta-G solvation = -2425.799978 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57918 -38.51790 -36.69431 -34.37180 -34.08512 -31.00311 -27.40006 -27.05228 -23.23259 -22.91737 -22.01757 -21.12877 -18.93937 -17.58960 -17.30522 -16.75038 -16.68714 -16.07859 -15.36117 -14.77617 -14.51497 -14.41863 -13.83284 -13.58350 -13.11320 -12.91997 -12.81150 -12.69912 -12.32160 -12.26271 -12.15044 -11.68613 -11.27204 -11.11585 -10.68288 -10.54414 -9.73746 -9.24094 -8.16743 -6.34747 1.45672 1.48076 1.55839 1.84564 2.32080 2.52355 2.93064 3.13313 3.27306 3.98153 4.07339 4.13760 4.22001 4.41716 4.54023 4.72884 4.78536 4.83158 4.91791 5.09695 5.10401 5.33788 5.43570 5.61811 5.69412 5.89722 6.05895 6.10632 6.28747 6.73336 7.00687 7.33405 7.59761 8.89434 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.071262 B = 0.005504 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.823993 B = 5085.571483 C = 5274.961980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.706 5.706 13 C 0.493 3.507 14 O -0.594 6.594 15 C 0.058 3.942 16 N -0.666 5.666 17 C 0.005 3.995 18 C -0.174 4.174 19 C -0.184 4.184 20 H 0.065 0.935 21 H 0.011 0.989 22 H 0.041 0.959 23 H 0.265 0.735 24 H 0.406 0.594 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.346 0.654 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -7.863 -14.298 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.356 5.356 13 C 0.280 3.720 14 O -0.474 6.474 15 C -0.074 4.074 16 N -0.298 5.298 17 C -0.105 4.105 18 C -0.212 4.212 19 C -0.222 4.222 20 H 0.084 0.916 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.241 0.759 25 H 0.136 0.864 26 H 0.106 0.894 27 H 0.166 0.834 28 H 0.139 0.861 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.047 -6.670 -13.993 16.021 hybrid contribution -0.589 -0.691 0.839 1.236 sum 3.458 -7.361 -13.155 15.466 Atomic orbital electron populations 1.21888 0.98287 0.99465 0.99502 1.18324 0.91134 0.91842 0.82123 0.98748 1.21533 1.32587 1.13687 0.90799 0.90728 1.25829 0.94833 0.95598 1.02421 1.70052 1.36962 1.24040 1.24665 0.85369 0.78616 0.78718 0.77448 1.19596 1.21243 1.18726 1.46245 1.65395 1.14274 1.09672 1.21342 0.77538 0.87252 0.85854 1.90639 1.52615 1.18329 1.85865 1.21804 1.03668 0.93949 0.87969 1.59813 1.34166 1.32041 1.03774 1.22529 1.04902 0.96833 0.86229 1.23198 0.92882 1.02265 1.02860 1.23320 0.98399 1.03419 0.97042 0.91591 0.96988 0.93958 0.92560 0.75868 0.86400 0.89387 0.83422 0.86147 0.90061 0.86916 0.86569 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 14.17 2.56 44.24 0.11 14.29 16 3 H -0.01 -0.34 7.58 -2.38 -0.02 -0.36 16 4 C -0.55 -29.15 8.73 25.60 0.22 -28.93 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.27 11.31 21.45 0.24 -53.02 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 12 N -0.71 -29.15 5.07 -446.09 -2.26 -31.41 16 13 C 0.49 19.69 7.83 87.66 0.69 20.37 16 14 O -0.59 -29.81 15.87 -3.06 -0.05 -29.86 16 15 C 0.06 1.56 6.02 85.56 0.52 2.08 16 16 N -0.67 -18.47 6.37 -495.56 -3.16 -21.63 16 17 C 0.00 0.10 6.25 44.91 0.28 0.38 16 18 C -0.17 -3.26 10.46 30.62 0.32 -2.94 16 19 C -0.18 -3.13 10.34 30.62 0.32 -2.82 16 20 H 0.07 3.71 6.06 -2.38 -0.01 3.69 16 21 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 22 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.41 13.70 8.54 -92.70 -0.79 12.91 16 25 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.35 10.20 8.39 -89.70 -0.75 9.44 16 28 H 0.12 1.91 7.90 -2.39 -0.02 1.89 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -68.11 275.87 -0.05 -68.16 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.42 Total: 26.27 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 3.57 Total: -2.54 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -5.18 Total: -106.07 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.05 Total: -29.86 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.11 -0.05 -68.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392495.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.019 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds