Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 N 1.46904 * 109.47177 * 179.97438 * 15 13 12 17 17 C 1.46900 * 110.99767 * 180.02562 * 16 15 13 18 18 C 1.53008 * 117.49519 * 223.62106 * 17 16 15 19 19 C 1.53001 * 59.99950 * 252.51219 * 18 17 16 20 20 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 21 21 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 22 22 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 23 23 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 24 24 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 25 25 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 26 26 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 27 27 H 1.00895 * 110.99802 * 303.95446 * 16 15 13 28 28 H 1.08997 * 115.55562 * 9.33081 * 17 16 15 29 29 H 1.09000 * 117.49739 * 0.02562 * 18 17 16 30 30 H 1.08995 * 117.49596 * 145.02187 * 18 17 16 31 31 H 1.08998 * 117.49747 * 252.51243 * 19 18 17 32 32 H 1.09002 * 117.52060 * 107.47921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 7 2.6997 0.2157 4.7119 17 6 3.1871 -0.4431 5.9311 18 6 2.4529 -0.1409 7.2390 19 6 3.8480 0.4373 6.9937 20 1 -0.3633 0.6089 0.8278 21 1 -0.3633 0.4124 -0.9413 22 1 -0.3633 -1.0214 0.1135 23 1 2.2471 -1.8383 -3.4691 24 1 2.2490 -1.6317 1.1527 25 1 1.9778 -1.5507 3.8325 26 1 3.6493 -1.1201 3.3979 27 1 3.2659 1.0193 4.4845 28 1 3.5811 -1.4503 5.7959 29 1 1.6080 0.5464 7.1947 30 1 2.3636 -0.9494 7.9644 31 1 4.6766 0.0090 7.5578 32 1 3.9217 1.5051 6.7879 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = -15.093104 kcal Electronic energy + Delta-G solvation = -13857.665317 eV Core-core repulsion = 11432.864811 eV Total energy + Delta-G solvation = -2424.800506 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15394 -37.62273 -34.97824 -33.15309 -32.40203 -29.78368 -26.02720 -24.74521 -22.50545 -21.24610 -20.87669 -19.53268 -17.80219 -16.52057 -16.16192 -15.69684 -14.82897 -14.57494 -13.95017 -13.48616 -12.93307 -12.85899 -12.59077 -12.22568 -12.02699 -11.63980 -11.59722 -11.34107 -10.86477 -10.52636 -10.46822 -10.02020 -9.78640 -9.18094 -9.06772 -8.34694 -8.32076 -8.14144 -6.58594 -4.21953 3.25766 3.39710 3.45219 3.58148 3.65433 3.69581 4.34078 4.42360 4.78367 4.85597 5.05859 5.17295 5.24512 5.43581 5.49719 5.51260 5.56007 5.82192 6.05608 6.40901 6.58321 6.69919 6.89693 6.99490 7.29427 7.31918 7.41979 7.67107 8.23060 8.49420 8.71011 8.99906 9.47065 10.82158 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.066154 B = 0.005948 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.153574 B = 4706.651254 C = 4840.481636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.242 3.758 3 H 0.040 0.960 4 C -0.618 4.618 5 H 0.061 0.939 6 C 0.038 3.962 7 N -0.898 5.898 8 Si 1.043 2.957 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.280 1.280 12 N -0.704 5.704 13 C 0.500 3.500 14 O -0.545 6.545 15 C 0.042 3.958 16 N -0.643 5.643 17 C 0.016 3.984 18 C -0.170 4.170 19 C -0.194 4.194 20 H 0.030 0.970 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.268 0.732 24 H 0.392 0.608 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.353 0.647 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -0.761 16.290 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.138 3.862 3 H 0.058 0.942 4 C -0.655 4.655 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.531 5.531 8 Si 0.871 3.129 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.207 1.207 12 N -0.353 5.353 13 C 0.284 3.716 14 O -0.423 6.423 15 C -0.091 4.091 16 N -0.275 5.275 17 C -0.095 4.095 18 C -0.208 4.208 19 C -0.233 4.233 20 H 0.049 0.951 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.225 0.775 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.174 0.826 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.269 1.157 15.307 15.403 hybrid contribution 1.547 -1.915 0.906 2.623 sum 2.816 -0.758 16.213 16.473 Atomic orbital electron populations 1.22493 0.98880 1.00107 1.00381 1.18990 0.90592 0.94136 0.82435 0.94212 1.22082 1.41747 1.10544 0.91173 0.92115 1.25697 0.94251 1.05130 0.91724 1.70887 1.41034 1.09907 1.31315 0.84064 0.77665 0.75046 0.76159 1.20904 1.19714 1.20658 1.46261 1.65390 1.13736 1.09899 1.20385 0.78941 0.87711 0.84527 1.90650 1.50738 1.16022 1.84902 1.21876 1.00960 0.95960 0.90269 1.59852 1.57174 1.08790 1.01670 1.22381 1.02407 0.97690 0.87037 1.23133 0.95564 1.03415 0.98696 1.23255 0.96646 0.99946 1.03416 0.95113 0.91976 0.93773 0.92152 0.77484 0.88395 0.92499 0.82596 0.88228 0.88207 0.88966 0.88813 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.16 37.16 0.34 -3.36 16 2 C 0.24 5.90 2.14 -69.08 -0.15 5.75 16 3 H 0.04 1.05 6.23 -51.93 -0.32 0.73 16 4 C -0.62 -16.80 9.00 -34.44 -0.31 -17.11 16 5 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 6 C 0.04 1.09 5.29 -17.82 -0.09 0.99 16 7 N -0.90 -26.82 13.70 55.43 0.76 -26.06 16 8 Si 1.04 25.32 26.29 -169.99 -4.47 20.85 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.27 -6.19 5.76 56.52 0.33 -5.86 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.70 -14.30 5.07 -54.93 -0.28 -14.58 16 13 C 0.50 9.61 7.83 -10.99 -0.09 9.53 16 14 O -0.55 -12.55 15.86 5.56 0.09 -12.46 16 15 C 0.04 0.59 6.02 -4.98 -0.03 0.56 16 16 N -0.64 -8.93 6.37 -107.99 -0.69 -9.62 16 17 C 0.02 0.17 6.26 -67.71 -0.42 -0.25 16 18 C -0.17 -1.68 10.46 -26.73 -0.28 -1.96 16 19 C -0.19 -1.81 10.33 -26.73 -0.28 -2.09 16 20 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 1.47 4.88 -51.93 -0.25 1.21 16 22 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 24 H 0.39 6.99 8.53 -40.82 -0.35 6.64 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.35 5.06 8.38 -39.29 -0.33 4.74 16 28 H 0.10 0.96 7.90 -51.93 -0.41 0.55 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 271.50 15.07 4.09 4.09 Total: -1.00 -31.37 271.50 -6.50 -37.87 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.69 Total: 7.86 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.31 Total: -7.95 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.21 Total: -50.26 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -4.47 Total: 20.85 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.37 -6.50 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.773 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds