Wall clock time and date at job start Mon Mar 30 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 N 1.46904 * 109.47177 * 179.97438 * 15 13 12 17 17 C 1.46900 * 110.99767 * 180.02562 * 16 15 13 18 18 C 1.53008 * 117.49519 * 223.62106 * 17 16 15 19 19 C 1.53001 * 59.99950 * 252.51219 * 18 17 16 20 20 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 21 21 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 22 22 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 23 23 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 24 24 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 25 25 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 26 26 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 27 27 H 1.00895 * 110.99802 * 303.95446 * 16 15 13 28 28 H 1.08997 * 115.55562 * 9.33081 * 17 16 15 29 29 H 1.09000 * 117.49739 * 0.02562 * 18 17 16 30 30 H 1.08995 * 117.49596 * 145.02187 * 18 17 16 31 31 H 1.08998 * 117.49747 * 252.51243 * 19 18 17 32 32 H 1.09002 * 117.52060 * 107.47921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 7 2.6997 0.2157 4.7119 17 6 3.1871 -0.4431 5.9311 18 6 2.4529 -0.1409 7.2390 19 6 3.8480 0.4373 6.9937 20 1 -0.3633 0.6089 0.8278 21 1 -0.3633 0.4124 -0.9413 22 1 -0.3633 -1.0214 0.1135 23 1 2.2471 -1.8383 -3.4691 24 1 2.2490 -1.6317 1.1527 25 1 1.9778 -1.5507 3.8325 26 1 3.6493 -1.1201 3.3979 27 1 3.2659 1.0193 4.4845 28 1 3.5811 -1.4503 5.7959 29 1 1.6080 0.5464 7.1947 30 1 2.3636 -0.9494 7.9644 31 1 4.6766 0.0090 7.5578 32 1 3.9217 1.5051 6.7879 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:37 Heat of formation + Delta-G solvation = -39.289884 kcal Electronic energy + Delta-G solvation = -13858.714568 eV Core-core repulsion = 11432.864811 eV Total energy + Delta-G solvation = -2425.849757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.68041 -38.55936 -36.80581 -34.48363 -34.18755 -31.58540 -27.33531 -26.75407 -23.23798 -22.70716 -22.04084 -21.23228 -19.78214 -17.97784 -17.35858 -16.92759 -16.35386 -15.96332 -15.33036 -14.98535 -14.64630 -14.44741 -14.16696 -13.78654 -13.58209 -13.33727 -12.93950 -12.42868 -12.33304 -11.96112 -11.72892 -11.66763 -11.29866 -11.16623 -10.73341 -10.47820 -9.91351 -9.28268 -8.80973 -6.45468 1.45646 1.50193 1.69845 1.75807 2.31566 2.41146 2.90977 3.00204 3.21974 3.89146 4.04756 4.11357 4.19065 4.37889 4.49171 4.50047 4.70907 4.74646 4.79329 4.81897 5.07981 5.09442 5.32276 5.43422 5.62900 5.65106 5.98340 6.01141 6.25338 6.52020 6.86228 7.27717 7.45137 8.58791 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.066154 B = 0.005948 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.153574 B = 4706.651254 C = 4840.481636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.244 3.756 3 H 0.021 0.979 4 C -0.613 4.613 5 H 0.042 0.958 6 C -0.005 4.005 7 N -0.927 5.927 8 Si 1.074 2.926 9 H -0.281 1.281 10 H -0.249 1.249 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.498 3.502 14 O -0.585 6.585 15 C 0.056 3.944 16 N -0.662 5.662 17 C 0.003 3.997 18 C -0.171 4.171 19 C -0.185 4.185 20 H 0.036 0.964 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.258 0.742 24 H 0.405 0.595 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.346 0.654 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -0.954 18.130 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.139 3.861 3 H 0.039 0.961 4 C -0.651 4.651 5 H 0.060 0.940 6 C -0.206 4.206 7 N -0.562 5.562 8 Si 0.896 3.104 9 H -0.207 1.207 10 H -0.173 1.173 11 H -0.200 1.200 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.466 6.466 15 C -0.076 4.076 16 N -0.294 5.294 17 C -0.107 4.107 18 C -0.209 4.209 19 C -0.223 4.223 20 H 0.055 0.945 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.240 0.760 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.392 0.924 17.187 17.268 hybrid contribution 1.557 -1.897 0.405 2.487 sum 2.949 -0.973 17.591 17.863 Atomic orbital electron populations 1.22370 0.97712 1.00766 1.00266 1.18706 0.91402 0.93042 0.83000 0.96114 1.22250 1.40669 1.09721 0.92482 0.94007 1.26813 0.94168 1.07822 0.91778 1.70986 1.43222 1.09764 1.32238 0.83666 0.78697 0.71454 0.76564 1.20664 1.17350 1.20004 1.46104 1.65643 1.14331 1.09366 1.21269 0.77643 0.87305 0.85328 1.90629 1.52328 1.18010 1.85598 1.21803 1.02446 0.95608 0.87752 1.59855 1.57977 1.09022 1.02515 1.22522 1.03528 0.98631 0.86009 1.23182 0.95383 1.03771 0.98596 1.23313 0.96989 0.99524 1.02431 0.94466 0.92630 0.92888 0.93233 0.76021 0.86233 0.89928 0.83359 0.86419 0.89790 0.87026 0.86760 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.84 9.16 71.98 0.66 -6.18 16 2 C 0.24 11.67 2.14 44.25 0.09 11.76 16 3 H 0.02 1.09 6.23 -2.39 -0.01 1.08 16 4 C -0.61 -33.33 9.00 25.60 0.23 -33.10 16 5 H 0.04 2.38 7.96 -2.91 -0.02 2.36 16 6 C 0.00 -0.28 5.29 84.66 0.45 0.17 16 7 N -0.93 -55.90 13.70 21.45 0.29 -55.61 16 8 Si 1.07 50.53 26.29 68.60 1.80 52.34 16 9 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.25 -10.76 5.76 99.48 0.57 -10.18 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 N -0.70 -27.67 5.07 -446.10 -2.26 -29.94 16 13 C 0.50 18.37 7.83 87.66 0.69 19.05 16 14 O -0.59 -26.50 15.86 -3.03 -0.05 -26.55 16 15 C 0.06 1.42 6.02 85.56 0.51 1.93 16 16 N -0.66 -17.08 6.37 -495.56 -3.16 -20.24 16 17 C 0.00 0.06 6.26 44.92 0.28 0.34 16 18 C -0.17 -2.98 10.46 30.60 0.32 -2.66 16 19 C -0.18 -2.97 10.33 30.60 0.32 -2.65 16 20 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.05 2.53 4.88 -2.39 -0.01 2.52 16 22 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.26 15.56 8.73 -92.71 -0.81 14.75 16 24 H 0.40 13.78 8.53 -92.71 -0.79 12.99 16 25 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.35 9.53 8.38 -89.70 -0.75 8.78 16 28 H 0.12 1.81 7.90 -2.39 -0.02 1.79 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -66.91 271.50 -0.41 -67.32 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.59 Total: 24.03 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.55 Total: -11.35 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -5.13 Total: -105.78 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 1.80 Total: 52.34 kcal Total: -66.91 -0.41 -67.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.028 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds