Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47239 * 2 1 4 4 C 1.50701 * 109.47093 * 120.00361 * 2 1 3 5 5 H 1.08002 * 120.00117 * 119.99704 * 4 2 1 6 6 C 1.37877 * 120.00109 * 299.99771 * 4 2 1 7 7 N 1.31506 * 120.00264 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99539 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47513 * 90.00097 * 8 6 4 10 10 H 1.48507 * 109.46962 * 209.99801 * 8 6 4 11 11 H 1.48493 * 109.47188 * 329.99780 * 8 6 4 12 12 N 1.46905 * 109.47063 * 240.00225 * 2 1 3 13 13 C 1.46898 * 111.00003 * 85.00162 * 12 2 1 14 14 H 1.08998 * 109.33170 * 324.78704 * 13 12 2 15 15 C 1.53071 * 109.40072 * 205.00102 * 13 12 2 16 16 C 1.53343 * 108.42577 * 190.97190 * 15 13 12 17 17 C 1.52918 * 108.81090 * 67.44783 * 16 15 13 18 18 N 1.45819 * 110.45277 * 309.50553 * 17 16 15 19 19 C 1.33355 * 124.16935 * 18.74394 * 18 17 16 20 20 O 1.21283 * 118.24705 * 177.93864 * 19 18 17 21 21 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46862 * 299.99690 * 1 2 3 23 23 H 1.08999 * 109.46886 * 59.99855 * 1 2 3 24 24 H 0.97000 * 120.00272 * 179.97438 * 7 6 4 25 25 H 1.00906 * 111.00023 * 208.95714 * 12 2 1 26 26 H 1.08994 * 109.67741 * 71.23373 * 15 13 12 27 27 H 1.09010 * 109.70303 * 310.72411 * 15 13 12 28 28 H 1.09002 * 109.60408 * 187.28737 * 16 15 13 29 29 H 1.08997 * 109.60323 * 307.60967 * 16 15 13 30 30 H 1.08998 * 109.30050 * 69.63901 * 17 16 15 31 31 H 1.09000 * 109.30101 * 189.01831 * 17 16 15 32 32 H 0.97005 * 117.88580 * 198.93156 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1372 -0.8598 3.5565 8 14 0.6248 1.2789 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9069 11 1 0.8471 2.1763 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2547 0.9295 -2.2904 15 6 1.9768 -0.5815 -3.6451 16 6 2.3184 0.3449 -4.8183 17 6 3.7982 0.7214 -4.7346 18 7 4.1267 1.2030 -3.3981 19 6 3.3826 0.9736 -2.3154 20 8 3.7772 1.3936 -1.2482 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9032 -0.5282 4.4375 25 1 2.9173 -1.1206 -1.0288 26 1 0.9615 -0.9606 -3.7603 27 1 2.6789 -1.4151 -3.6192 28 1 2.1247 -0.1700 -5.7593 29 1 1.7081 1.2462 -4.7622 30 1 4.4061 -0.1551 -4.9588 31 1 4.0133 1.5015 -5.4648 32 1 4.9367 1.7258 -3.2906 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050396146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = -33.676919 kcal Electronic energy + Delta-G solvation = -14713.304173 eV Core-core repulsion = 12287.697812 eV Total energy + Delta-G solvation = -2425.606361 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.13797 -36.22491 -35.86341 -32.89972 -31.49297 -29.79492 -27.24090 -24.98062 -23.41274 -22.44282 -19.87794 -19.09062 -17.09133 -16.59930 -16.16864 -15.24895 -15.10546 -14.08316 -13.91476 -13.73732 -13.39864 -13.03707 -12.79972 -12.11614 -11.74957 -11.64436 -11.28638 -11.08549 -10.93874 -10.62040 -10.46321 -10.01169 -9.59925 -9.39551 -8.93527 -8.90474 -8.49900 -7.52697 -5.98043 -3.95703 2.98075 3.35000 3.46107 3.47256 3.50011 4.50466 4.62152 4.72881 4.85349 4.99079 5.16290 5.35969 5.41730 5.54560 5.68449 5.76938 5.81798 6.13899 6.27777 6.43847 6.59659 6.75788 6.92853 6.97376 7.47851 7.52553 7.66214 7.93032 8.27729 8.54665 8.68391 9.05156 9.64618 11.15434 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.009004 C = 0.008650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.076356 B = 3109.151814 C = 3236.076065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.175 3.825 3 H 0.023 0.977 4 C -0.510 4.510 5 H 0.076 0.924 6 C 0.071 3.929 7 N -0.902 5.902 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.267 1.267 12 N -0.649 5.649 13 C 0.074 3.926 14 H 0.101 0.899 15 C -0.110 4.110 16 C -0.137 4.137 17 C 0.113 3.887 18 N -0.729 5.729 19 C 0.482 3.518 20 O -0.532 6.532 21 H 0.057 0.943 22 H 0.038 0.962 23 H 0.023 0.977 24 H 0.263 0.737 25 H 0.343 0.657 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 3.294 -18.361 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.067 3.933 3 H 0.041 0.959 4 C -0.548 4.548 5 H 0.094 0.906 6 C -0.131 4.131 7 N -0.541 5.541 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.226 1.226 11 H -0.193 1.193 12 N -0.280 5.280 13 C -0.041 4.041 14 H 0.118 0.882 15 C -0.148 4.148 16 C -0.176 4.176 17 C -0.011 4.011 18 N -0.383 5.383 19 C 0.266 3.734 20 O -0.407 6.407 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.162 0.838 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.480 3.109 -17.749 18.026 hybrid contribution 0.554 1.539 0.391 1.682 sum 0.075 4.649 -17.358 17.970 Atomic orbital electron populations 1.22121 0.98946 1.00932 0.97679 1.19686 0.91126 0.94600 0.87934 0.95891 1.21017 1.31829 1.13343 0.88623 0.90601 1.24884 0.95869 0.96597 0.95729 1.69888 1.45965 1.40408 0.97825 0.86802 0.80314 0.83885 0.76872 1.20672 1.22589 1.19252 1.60917 1.32503 1.29395 1.05192 1.21693 0.93235 0.94671 0.94459 0.88168 1.21655 1.03327 0.97916 0.91896 1.21892 0.95156 1.00735 0.99782 1.21316 0.96775 0.99292 0.83754 1.45728 1.27652 1.56741 1.08193 1.21848 0.87831 0.80248 0.83424 1.90845 1.71373 1.50109 1.28335 0.92361 0.94365 0.95758 0.92743 0.83801 0.90182 0.91067 0.89936 0.91168 0.92055 0.91162 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.88 37.16 0.33 -2.88 16 2 C 0.18 4.43 1.71 -68.86 -0.12 4.31 16 3 H 0.02 0.64 5.54 -51.93 -0.29 0.36 16 4 C -0.51 -15.15 9.17 -34.44 -0.32 -15.47 16 5 H 0.08 2.42 7.86 -52.49 -0.41 2.00 16 6 C 0.07 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -28.81 13.96 55.43 0.77 -28.04 16 8 Si 0.89 23.49 24.37 -169.99 -4.14 19.34 16 9 H -0.28 -7.06 6.87 56.52 0.39 -6.67 16 10 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.27 -6.95 6.53 56.52 0.37 -6.58 16 12 N -0.65 -13.75 5.95 -102.40 -0.61 -14.36 16 13 C 0.07 1.26 2.57 -69.08 -0.18 1.08 16 14 H 0.10 1.74 7.10 -51.93 -0.37 1.37 16 15 C -0.11 -1.35 5.64 -26.52 -0.15 -1.49 16 16 C -0.14 -1.23 6.01 -26.60 -0.16 -1.39 16 17 C 0.11 1.00 7.18 -4.45 -0.03 0.97 16 18 N -0.73 -9.48 5.45 -61.35 -0.33 -9.81 16 19 C 0.48 8.63 7.18 -11.87 -0.09 8.55 16 20 O -0.53 -12.44 15.81 5.55 0.09 -12.35 16 21 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 22 H 0.04 0.92 3.27 -51.93 -0.17 0.75 16 23 H 0.02 0.47 7.42 -51.93 -0.39 0.09 16 24 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 25 H 0.34 7.61 7.96 -39.29 -0.31 7.30 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.88 8.13 -51.92 -0.42 0.46 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.39 4.71 8.80 -40.82 -0.36 4.35 16 LS Contribution 253.05 15.07 3.81 3.81 Total: -1.00 -34.65 253.05 -5.65 -40.30 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.43 Total: 5.37 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.80 Total: -4.27 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.17 Total: -52.21 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.14 Total: 19.34 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -34.65 -5.65 -40.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050396146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.626 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds