Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47239 * 2 1 4 4 C 1.50701 * 109.47093 * 120.00361 * 2 1 3 5 5 H 1.08002 * 120.00117 * 119.99704 * 4 2 1 6 6 C 1.37877 * 120.00109 * 299.99771 * 4 2 1 7 7 N 1.31506 * 120.00264 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99539 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47513 * 90.00097 * 8 6 4 10 10 H 1.48507 * 109.46962 * 209.99801 * 8 6 4 11 11 H 1.48493 * 109.47188 * 329.99780 * 8 6 4 12 12 N 1.46905 * 109.47063 * 240.00225 * 2 1 3 13 13 C 1.46898 * 111.00003 * 85.00162 * 12 2 1 14 14 H 1.08998 * 109.33170 * 324.78704 * 13 12 2 15 15 C 1.53071 * 109.40072 * 205.00102 * 13 12 2 16 16 C 1.53343 * 108.42577 * 190.97190 * 15 13 12 17 17 C 1.52918 * 108.81090 * 67.44783 * 16 15 13 18 18 N 1.45819 * 110.45277 * 309.50553 * 17 16 15 19 19 C 1.33355 * 124.16935 * 18.74394 * 18 17 16 20 20 O 1.21283 * 118.24705 * 177.93864 * 19 18 17 21 21 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46862 * 299.99690 * 1 2 3 23 23 H 1.08999 * 109.46886 * 59.99855 * 1 2 3 24 24 H 0.97000 * 120.00272 * 179.97438 * 7 6 4 25 25 H 1.00906 * 111.00023 * 208.95714 * 12 2 1 26 26 H 1.08994 * 109.67741 * 71.23373 * 15 13 12 27 27 H 1.09010 * 109.70303 * 310.72411 * 15 13 12 28 28 H 1.09002 * 109.60408 * 187.28737 * 16 15 13 29 29 H 1.08997 * 109.60323 * 307.60967 * 16 15 13 30 30 H 1.08998 * 109.30050 * 69.63901 * 17 16 15 31 31 H 1.09000 * 109.30101 * 189.01831 * 17 16 15 32 32 H 0.97005 * 117.88580 * 198.93156 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1372 -0.8598 3.5565 8 14 0.6248 1.2789 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9950 3.9069 11 1 0.8471 2.1763 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2547 0.9295 -2.2904 15 6 1.9768 -0.5815 -3.6451 16 6 2.3184 0.3449 -4.8183 17 6 3.7982 0.7214 -4.7346 18 7 4.1267 1.2030 -3.3981 19 6 3.3826 0.9736 -2.3154 20 8 3.7772 1.3936 -1.2482 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9032 -0.5282 4.4375 25 1 2.9173 -1.1206 -1.0288 26 1 0.9615 -0.9606 -3.7603 27 1 2.6789 -1.4151 -3.6192 28 1 2.1247 -0.1700 -5.7593 29 1 1.7081 1.2462 -4.7622 30 1 4.4061 -0.1551 -4.9588 31 1 4.0133 1.5015 -5.4648 32 1 4.9367 1.7258 -3.2906 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050396146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = -63.403968 kcal Electronic energy + Delta-G solvation = -14714.593235 eV Core-core repulsion = 12287.697812 eV Total energy + Delta-G solvation = -2426.895423 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44964 -37.62446 -37.39068 -34.75659 -33.13084 -31.27298 -28.60186 -27.10199 -24.64400 -23.54333 -21.79839 -20.28057 -18.77571 -18.19303 -17.62328 -16.97250 -16.44596 -15.51334 -15.27996 -15.24977 -14.91216 -14.51210 -14.28221 -14.03845 -13.38580 -13.00884 -12.78922 -12.62682 -12.22414 -12.16702 -12.03939 -11.74574 -11.44865 -11.09196 -10.95152 -10.77667 -10.01255 -9.24422 -8.32746 -6.35004 1.24450 1.32872 1.42782 1.59477 2.29726 2.37385 3.03303 3.34562 3.69190 3.94527 4.00960 4.14698 4.35654 4.57827 4.62620 4.67842 4.80363 4.89850 4.93753 5.01893 5.13122 5.22445 5.39399 5.52093 5.63154 5.89234 5.92718 6.28787 6.36878 6.55702 6.73552 7.25541 7.29763 8.84402 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.009004 C = 0.008650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.076356 B = 3109.151814 C = 3236.076065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.036 0.964 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.954 3.046 9 H -0.255 1.255 10 H -0.297 1.297 11 H -0.262 1.262 12 N -0.647 5.647 13 C 0.069 3.931 14 H 0.100 0.900 15 C -0.102 4.102 16 C -0.130 4.130 17 C 0.103 3.897 18 N -0.713 5.713 19 C 0.477 3.523 20 O -0.601 6.601 21 H 0.058 0.942 22 H 0.030 0.970 23 H 0.060 0.940 24 H 0.266 0.734 25 H 0.332 0.668 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 4.239 -21.514 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.072 3.928 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.054 0.946 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.781 3.219 9 H -0.181 1.181 10 H -0.225 1.225 11 H -0.187 1.187 12 N -0.276 5.276 13 C -0.045 4.045 14 H 0.117 0.883 15 C -0.140 4.140 16 C -0.168 4.168 17 C -0.019 4.019 18 N -0.364 5.364 19 C 0.263 3.737 20 O -0.482 6.482 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.149 0.851 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.708 4.043 -21.002 21.456 hybrid contribution 1.059 1.181 1.238 2.012 sum -0.648 5.223 -19.765 20.454 Atomic orbital electron populations 1.21992 0.96700 1.01417 0.99012 1.19455 0.92748 0.92773 0.87809 0.98277 1.21361 1.31031 1.12278 0.90978 0.94607 1.25780 0.97520 0.99932 0.95337 1.70032 1.47862 1.42484 0.98500 0.85780 0.79533 0.79800 0.76787 1.18057 1.22482 1.18716 1.60928 1.31755 1.30087 1.04856 1.21912 0.92874 0.94799 0.94893 0.88254 1.21645 1.04098 0.97908 0.90389 1.21927 0.94898 1.00374 0.99628 1.21752 0.97314 1.01203 0.81676 1.45698 1.26754 1.55113 1.08837 1.21941 0.88375 0.79835 0.83554 1.90816 1.73084 1.53137 1.31147 0.92316 0.95184 0.92130 0.92495 0.85116 0.89203 0.91202 0.86234 0.90849 0.90324 0.87618 0.76826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.88 71.98 0.64 -5.32 16 2 C 0.18 9.28 1.71 44.17 0.08 9.35 16 3 H 0.00 -0.02 5.54 -2.39 -0.01 -0.04 16 4 C -0.52 -31.98 9.17 25.60 0.23 -31.74 16 5 H 0.04 2.42 7.86 -2.91 -0.02 2.40 16 6 C 0.01 0.71 5.45 84.66 0.46 1.18 16 7 N -0.95 -62.58 13.96 21.45 0.30 -62.28 16 8 Si 0.95 48.89 24.37 68.60 1.67 50.56 16 9 H -0.26 -12.00 6.87 99.48 0.68 -11.32 16 10 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 11 H -0.26 -13.14 6.53 99.48 0.65 -12.50 16 12 N -0.65 -27.59 5.95 -477.88 -2.84 -30.43 16 13 C 0.07 2.27 2.57 44.03 0.11 2.38 16 14 H 0.10 3.27 7.10 -2.39 -0.02 3.25 16 15 C -0.10 -2.19 5.64 30.73 0.17 -2.02 16 16 C -0.13 -1.71 6.01 30.68 0.18 -1.52 16 17 C 0.10 1.37 7.18 86.48 0.62 1.99 16 18 N -0.71 -17.03 5.45 -467.18 -2.55 -19.57 16 19 C 0.48 16.89 7.18 87.71 0.63 17.52 16 20 O -0.60 -28.98 15.81 -3.04 -0.05 -29.03 16 21 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 22 H 0.03 1.38 3.27 -2.39 -0.01 1.37 16 23 H 0.06 2.23 7.42 -2.39 -0.02 2.21 16 24 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 25 H 0.33 15.29 7.96 -89.69 -0.71 14.58 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.54 8.13 -2.38 -0.02 1.52 16 28 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.40 8.89 8.80 -92.70 -0.82 8.07 16 Total: -1.00 -79.57 253.05 -0.81 -80.38 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.48 Total: 18.55 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 3.13 Total: -8.18 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -5.09 Total: -112.29 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.67 Total: 50.56 kcal Total: -79.57 -0.81 -80.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050396146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.975 kcal (2) G-P(sol) polarization free energy of solvation -79.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds