Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 120.00048 * 2 1 4 4 H 1.08001 * 120.00451 * 202.34644 * 3 2 1 5 5 C 1.38820 * 119.99635 * 22.33712 * 3 2 1 6 6 N 1.31614 * 119.99997 * 11.35434 * 5 3 2 7 7 Si 1.86804 * 119.99673 * 191.34630 * 5 3 2 8 8 H 1.48493 * 109.46951 * 90.00614 * 7 5 3 9 9 H 1.48503 * 109.46669 * 210.00341 * 7 5 3 10 10 H 1.48500 * 109.47341 * 330.00225 * 7 5 3 11 11 C 1.46498 * 120.00296 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47123 * 270.00283 * 11 2 1 13 13 C 1.50699 * 109.47166 * 179.97438 * 12 11 2 14 14 O 1.21283 * 119.99892 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00435 * 179.97438 * 13 12 11 16 16 C 1.46506 * 120.00299 * 179.97438 * 15 13 12 17 17 C 1.52992 * 117.49761 * 223.62461 * 16 15 13 18 18 C 1.52993 * 60.00202 * 252.51155 * 17 16 15 19 19 H 1.08999 * 109.47624 * 274.21073 * 1 2 3 20 20 H 1.09005 * 109.47332 * 34.21548 * 1 2 3 21 21 H 1.09001 * 109.46930 * 154.20987 * 1 2 3 22 22 H 0.97005 * 119.99960 * 179.97438 * 6 5 3 23 23 H 1.09002 * 109.47144 * 150.00154 * 11 2 1 24 24 H 1.09000 * 109.46948 * 30.00279 * 11 2 1 25 25 H 1.09000 * 109.47205 * 299.99839 * 12 11 2 26 26 H 1.09002 * 109.47216 * 59.99915 * 12 11 2 27 27 H 0.97001 * 119.99747 * 0.02562 * 15 13 12 28 28 H 1.09005 * 115.54733 * 9.33417 * 16 15 13 29 29 H 1.09004 * 117.50523 * 0.02562 * 17 16 15 30 30 H 1.09009 * 117.49758 * 145.02325 * 17 16 15 31 31 H 1.08997 * 117.50374 * 252.51320 * 18 17 16 32 32 H 1.09000 * 117.51789 * 107.47934 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5336 2.3430 0.4569 6 7 0.3840 2.2691 1.0934 7 14 2.3366 4.0048 0.1685 8 1 1.8678 4.5632 -1.1251 9 1 1.9679 4.9304 1.2698 10 1 3.8122 3.8420 0.1319 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4432 13 6 3.2055 -3.0151 1.4438 14 8 3.5088 -3.5406 0.3937 15 7 3.5428 -3.5980 2.6112 16 6 4.2744 -4.8674 2.6118 17 6 3.8166 -5.9461 3.5953 18 6 5.1248 -5.1920 3.8415 19 1 -0.3634 0.0755 1.0248 20 1 -0.3634 0.8498 -0.5779 21 1 -0.3633 -0.9253 -0.4471 22 1 -0.0463 3.0776 1.4130 23 1 3.1500 -1.1385 -0.5133 24 1 1.6085 -2.0285 -0.5130 25 1 3.0415 -0.9498 1.9568 26 1 1.5000 -1.8399 1.9571 27 1 3.3006 -3.1775 3.4511 28 1 4.6467 -5.1958 1.6413 29 1 2.9708 -5.7117 4.2418 30 1 3.8875 -6.9847 3.2721 31 1 6.0564 -5.7344 3.6802 32 1 5.1403 -4.4611 4.6499 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054049922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = 6.119673 kcal Electronic energy + Delta-G solvation = -13874.558423 eV Core-core repulsion = 11450.677772 eV Total energy + Delta-G solvation = -2423.880651 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50980 -37.09433 -35.52949 -32.70103 -31.74963 -29.35860 -25.85476 -24.41725 -22.54296 -21.91611 -20.68869 -19.82787 -16.96550 -16.52854 -16.32650 -14.98447 -14.80359 -14.47369 -13.88998 -13.45254 -13.00480 -12.68624 -12.27298 -12.10662 -11.75055 -11.31014 -11.14258 -10.84737 -10.78117 -10.62888 -10.48746 -10.10185 -9.90453 -9.77119 -9.45125 -8.66299 -8.52990 -6.75418 -5.70845 -3.16669 2.92852 3.27859 3.40424 3.46373 3.47632 3.83815 4.52171 4.67589 4.83609 4.87198 5.16140 5.44509 5.44695 5.65005 5.77759 5.88523 5.90283 5.91494 6.12863 6.46813 6.61254 6.77900 6.81646 7.02561 7.42628 7.68993 7.75358 7.84015 8.41787 8.53944 9.26677 9.89939 10.39038 11.34182 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.006002 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.361675 B = 4664.070543 C = 4837.514176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 C -0.158 4.158 13 C 0.521 3.479 14 O -0.545 6.545 15 N -0.712 5.712 16 C 0.083 3.917 17 C -0.198 4.198 18 C -0.194 4.194 19 H 0.027 0.973 20 H 0.045 0.955 21 H -0.003 1.003 22 H 0.252 0.748 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.401 0.599 28 H 0.135 0.865 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 -11.905 5.977 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.556 5.556 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.041 3.959 12 C -0.201 4.201 13 C 0.309 3.691 14 O -0.422 6.422 15 N -0.363 5.363 16 C -0.023 4.023 17 C -0.236 4.236 18 C -0.232 4.232 19 H 0.046 0.954 20 H 0.064 0.936 21 H 0.016 0.984 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.235 0.765 28 H 0.153 0.847 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.248 -12.092 5.227 14.180 hybrid contribution 0.251 1.117 0.680 1.331 sum 5.499 -10.976 5.907 13.623 Atomic orbital electron populations 1.20821 0.82505 0.95725 0.99214 1.44060 1.02027 1.00798 1.85605 1.19283 0.98033 0.85456 1.35556 0.91284 1.25033 0.97709 0.98513 0.98476 1.70069 1.17921 1.27024 1.40557 0.86238 0.78839 0.84031 0.77350 1.21474 1.21779 1.20485 1.20588 0.96546 0.87791 0.91006 1.22580 1.00046 0.92145 1.05367 1.21457 0.78160 0.86734 0.82735 1.90634 1.54665 1.65487 1.31397 1.45672 1.58475 1.22715 1.09486 1.21562 0.98461 0.86099 0.96210 1.23406 0.98196 0.97957 1.04082 1.23352 0.95538 1.03801 1.00507 0.95422 0.93616 0.98407 0.93793 0.93083 0.93726 0.88813 0.89677 0.76484 0.84701 0.88602 0.88264 0.88142 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 9.01 59.85 0.54 4.61 16 2 N -0.60 -15.55 2.93 -181.12 -0.53 -16.08 16 3 C -0.25 -7.05 9.67 -15.05 -0.15 -7.20 16 4 H 0.07 1.89 7.84 -52.49 -0.41 1.48 16 5 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 6 N -0.91 -26.44 10.58 55.49 0.59 -25.85 16 7 Si 0.91 21.92 29.57 -169.99 -5.03 16.90 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.72 5.00 -4.04 -0.02 3.70 16 12 C -0.16 -2.95 6.02 -27.88 -0.17 -3.12 16 13 C 0.52 8.97 7.83 -10.99 -0.09 8.88 16 14 O -0.55 -11.09 15.55 5.56 0.09 -11.01 16 15 N -0.71 -9.50 5.57 -53.81 -0.30 -9.80 16 16 C 0.08 0.99 6.43 -67.93 -0.44 0.55 16 17 C -0.20 -1.83 10.46 -26.74 -0.28 -2.11 16 18 C -0.19 -1.74 10.45 -26.74 -0.28 -2.02 16 19 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 20 H 0.05 1.23 7.19 -51.93 -0.37 0.86 16 21 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 22 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 23 H 0.05 1.16 7.99 -51.93 -0.41 0.74 16 24 H 0.04 0.96 7.82 -51.93 -0.41 0.55 16 25 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.40 4.40 8.83 -40.82 -0.36 4.04 16 28 H 0.14 1.78 7.40 -51.93 -0.38 1.40 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -31.37 275.02 -6.82 -38.19 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -4.81 Total: 0.30 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.97 Total: 3.21 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.24 Total: -51.73 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.37 -6.82 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054049922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.307 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds