Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 120.00048 * 2 1 4 4 H 1.08001 * 120.00451 * 202.34644 * 3 2 1 5 5 C 1.38820 * 119.99635 * 22.33712 * 3 2 1 6 6 N 1.31614 * 119.99997 * 11.35434 * 5 3 2 7 7 Si 1.86804 * 119.99673 * 191.34630 * 5 3 2 8 8 H 1.48493 * 109.46951 * 90.00614 * 7 5 3 9 9 H 1.48503 * 109.46669 * 210.00341 * 7 5 3 10 10 H 1.48500 * 109.47341 * 330.00225 * 7 5 3 11 11 C 1.46498 * 120.00296 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47123 * 270.00283 * 11 2 1 13 13 C 1.50699 * 109.47166 * 179.97438 * 12 11 2 14 14 O 1.21283 * 119.99892 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00435 * 179.97438 * 13 12 11 16 16 C 1.46506 * 120.00299 * 179.97438 * 15 13 12 17 17 C 1.52992 * 117.49761 * 223.62461 * 16 15 13 18 18 C 1.52993 * 60.00202 * 252.51155 * 17 16 15 19 19 H 1.08999 * 109.47624 * 274.21073 * 1 2 3 20 20 H 1.09005 * 109.47332 * 34.21548 * 1 2 3 21 21 H 1.09001 * 109.46930 * 154.20987 * 1 2 3 22 22 H 0.97005 * 119.99960 * 179.97438 * 6 5 3 23 23 H 1.09002 * 109.47144 * 150.00154 * 11 2 1 24 24 H 1.09000 * 109.46948 * 30.00279 * 11 2 1 25 25 H 1.09000 * 109.47205 * 299.99839 * 12 11 2 26 26 H 1.09002 * 109.47216 * 59.99915 * 12 11 2 27 27 H 0.97001 * 119.99747 * 0.02562 * 15 13 12 28 28 H 1.09005 * 115.54733 * 9.33417 * 16 15 13 29 29 H 1.09004 * 117.50523 * 0.02562 * 17 16 15 30 30 H 1.09009 * 117.49758 * 145.02325 * 17 16 15 31 31 H 1.08997 * 117.50374 * 252.51320 * 18 17 16 32 32 H 1.09000 * 117.51789 * 107.47934 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5336 2.3430 0.4569 6 7 0.3840 2.2691 1.0934 7 14 2.3366 4.0048 0.1685 8 1 1.8678 4.5632 -1.1251 9 1 1.9679 4.9304 1.2698 10 1 3.8122 3.8420 0.1319 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4432 13 6 3.2055 -3.0151 1.4438 14 8 3.5088 -3.5406 0.3937 15 7 3.5428 -3.5980 2.6112 16 6 4.2744 -4.8674 2.6118 17 6 3.8166 -5.9461 3.5953 18 6 5.1248 -5.1920 3.8415 19 1 -0.3634 0.0755 1.0248 20 1 -0.3634 0.8498 -0.5779 21 1 -0.3633 -0.9253 -0.4471 22 1 -0.0463 3.0776 1.4130 23 1 3.1500 -1.1385 -0.5133 24 1 1.6085 -2.0285 -0.5130 25 1 3.0415 -0.9498 1.9568 26 1 1.5000 -1.8399 1.9571 27 1 3.3006 -3.1775 3.4511 28 1 4.6467 -5.1958 1.6413 29 1 2.9708 -5.7117 4.2418 30 1 3.8875 -6.9847 3.2721 31 1 6.0564 -5.7344 3.6802 32 1 5.1403 -4.4611 4.6499 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054049922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -14.757789 kcal Electronic energy + Delta-G solvation = -13875.463738 eV Core-core repulsion = 11450.677772 eV Total energy + Delta-G solvation = -2424.785966 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81046 -38.17708 -37.40624 -34.04168 -33.56423 -31.13882 -27.93112 -26.15528 -23.30137 -23.24292 -22.11796 -21.33765 -18.81730 -18.07676 -17.39185 -16.73936 -16.45963 -15.50933 -15.46583 -15.24765 -14.69763 -14.12282 -13.85777 -13.61881 -13.05289 -12.77790 -12.64771 -12.46983 -12.41507 -12.30910 -12.03674 -11.96063 -11.62534 -11.45111 -10.90012 -10.63699 -9.71068 -8.82430 -7.82742 -5.31650 1.48160 1.49826 1.58398 1.59244 2.13840 2.52673 3.01007 3.31685 3.62944 3.82579 4.04565 4.09294 4.13452 4.28093 4.40705 4.76423 4.77277 4.86849 4.89147 5.03700 5.08148 5.22385 5.25158 5.35942 5.56635 5.63649 5.71812 6.32850 6.52592 7.15219 7.25259 7.85722 8.30291 9.20813 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.006002 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.361675 B = 4664.070543 C = 4837.514176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.619 5.619 3 C -0.267 4.267 4 H 0.068 0.932 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.270 1.270 11 C 0.169 3.831 12 C -0.144 4.144 13 C 0.525 3.475 14 O -0.582 6.582 15 N -0.695 5.695 16 C 0.046 3.954 17 C -0.182 4.182 18 C -0.172 4.172 19 H 0.011 0.989 20 H 0.019 0.981 21 H 0.026 0.974 22 H 0.249 0.751 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.414 0.586 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -12.685 7.142 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.342 5.342 3 C -0.397 4.397 4 H 0.085 0.915 5 C -0.243 4.243 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.195 1.195 11 C 0.042 3.958 12 C -0.186 4.186 13 C 0.313 3.687 14 O -0.462 6.462 15 N -0.346 5.346 16 C -0.060 4.060 17 C -0.220 4.220 18 C -0.210 4.210 19 H 0.029 0.971 20 H 0.038 0.962 21 H 0.045 0.955 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.251 0.749 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.149 -12.914 6.438 15.685 hybrid contribution 0.003 1.256 0.331 1.299 sum 6.152 -11.658 6.768 14.818 Atomic orbital electron populations 1.20601 0.82446 0.95968 0.97953 1.44236 1.02338 1.01529 1.86084 1.19537 0.98157 0.86617 1.35377 0.91461 1.25755 0.98376 1.01663 0.98522 1.70217 1.19085 1.27562 1.41438 0.85239 0.78388 0.79761 0.76877 1.21432 1.21779 1.19453 1.20565 0.95619 0.86499 0.93070 1.22205 1.00699 0.93037 1.02696 1.21001 0.78100 0.86236 0.83332 1.90624 1.56376 1.66324 1.32851 1.45412 1.57346 1.23049 1.08745 1.21678 1.01119 0.86278 0.96905 1.23488 0.98669 0.97759 1.02125 1.23454 0.95991 1.03271 0.98324 0.97073 0.96217 0.95546 0.94141 0.94224 0.93264 0.89363 0.88950 0.74941 0.86583 0.87846 0.87003 0.86672 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.83 9.01 127.77 1.15 9.99 16 2 N -0.62 -32.02 2.93 -726.93 -2.13 -34.15 16 3 C -0.27 -14.89 9.67 84.03 0.81 -14.08 16 4 H 0.07 3.70 7.84 -2.91 -0.02 3.67 16 5 C -0.05 -2.68 5.13 84.86 0.44 -2.25 16 6 N -0.94 -54.79 10.58 21.65 0.23 -54.56 16 7 Si 0.97 45.03 29.57 68.60 2.03 47.05 16 8 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 C 0.17 7.45 5.00 86.38 0.43 7.88 16 12 C -0.14 -5.28 6.02 29.85 0.18 -5.10 16 13 C 0.53 17.74 7.83 87.66 0.69 18.43 16 14 O -0.58 -23.68 15.55 -3.04 -0.05 -23.73 16 15 N -0.69 -17.45 5.57 -442.54 -2.46 -19.91 16 16 C 0.05 1.01 6.43 44.99 0.29 1.30 16 17 C -0.18 -2.84 10.46 30.59 0.32 -2.52 16 18 C -0.17 -2.57 10.45 30.59 0.32 -2.25 16 19 H 0.01 0.59 7.42 -2.39 -0.02 0.57 16 20 H 0.02 1.05 7.19 -2.38 -0.02 1.04 16 21 H 0.03 1.15 7.84 -2.39 -0.02 1.13 16 22 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 23 H 0.04 1.81 7.99 -2.39 -0.02 1.79 16 24 H 0.05 2.10 7.82 -2.39 -0.02 2.08 16 25 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 26 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 27 H 0.41 8.19 8.83 -92.71 -0.82 7.37 16 28 H 0.12 3.02 7.40 -2.38 -0.02 3.00 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -66.69 275.02 2.53 -64.16 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.28 Total: 9.72 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 4.63 Total: 11.41 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.36 Total: -108.62 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.69 2.53 -64.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054049922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.401 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds