Wall clock time and date at job start Mon Mar 30 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47506 * 2 1 4 4 C 1.50704 * 109.47304 * 119.99887 * 2 1 3 5 5 H 1.07995 * 120.00212 * 119.99871 * 4 2 1 6 6 C 1.37878 * 119.99621 * 299.99852 * 4 2 1 7 7 N 1.31508 * 120.00153 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99711 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47544 * 60.00187 * 8 6 4 10 10 H 1.48502 * 109.47255 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47383 * 299.99637 * 8 6 4 12 12 N 1.46501 * 109.47128 * 239.99515 * 2 1 3 13 13 C 1.34781 * 119.99784 * 84.99892 * 12 2 1 14 14 O 1.21277 * 119.99922 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99955 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.90502 * 56.13131 * 15 13 12 17 17 C 1.55144 * 110.99303 * 180.02562 * 15 13 12 18 18 C 1.54317 * 103.01861 * 153.74518 * 17 15 13 19 19 N 1.47440 * 107.23368 * 337.71644 * 18 17 15 20 20 C 1.47842 * 108.57011 * 359.01064 * 19 18 17 21 21 H 1.09005 * 109.46768 * 300.00663 * 1 2 3 22 22 H 1.08997 * 109.47185 * 59.99957 * 1 2 3 23 23 H 1.08999 * 109.47063 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00186 * 180.02562 * 7 6 4 25 25 H 0.97001 * 120.00117 * 265.00504 * 12 2 1 26 26 H 1.08999 * 110.69931 * 35.36298 * 17 15 13 27 27 H 1.09000 * 110.70045 * 272.13099 * 17 15 13 28 28 H 1.09000 * 109.88423 * 97.12723 * 18 17 15 29 29 H 1.09000 * 109.88637 * 218.31009 * 18 17 15 30 30 H 1.00903 * 110.99926 * 121.27902 * 19 18 17 31 31 H 1.09004 * 110.37187 * 142.92392 * 20 19 18 32 32 H 1.09002 * 110.37256 * 265.15497 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9437 0.8303 2.6033 8 14 2.3214 -1.1202 4.0079 9 1 3.8064 -1.1208 4.0082 10 1 1.8260 -0.4204 5.2204 11 1 1.8258 -2.5200 4.0079 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3572 14 8 1.8590 1.1584 -2.4116 15 6 2.6488 -0.7290 -3.5877 16 1 2.0306 -1.5976 -3.8145 17 6 2.7157 0.2377 -4.7993 18 6 3.8141 -0.3890 -5.6838 19 7 4.6513 -1.2310 -4.8097 20 6 4.1356 -1.1333 -3.4276 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7096 1.1620 3.4843 25 1 2.2489 -1.6319 -1.1525 26 1 3.0039 1.2386 -4.4781 27 1 1.7622 0.2606 -5.3271 28 1 3.3588 -1.0007 -6.4626 29 1 4.4209 0.3967 -6.1337 30 1 4.6561 -2.1888 -5.1270 31 1 4.2147 -2.0969 -2.9241 32 1 4.6805 -0.3699 -2.8723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062116752.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:09 Heat of formation + Delta-G solvation = -47.173575 kcal Electronic energy + Delta-G solvation = -14283.855722 eV Core-core repulsion = 11857.664102 eV Total energy + Delta-G solvation = -2426.191620 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53708 -37.36587 -34.76835 -32.39857 -30.44246 -29.33810 -28.15045 -25.26257 -22.79332 -21.33221 -20.33306 -19.26524 -17.31727 -16.78982 -15.80112 -15.24035 -14.61104 -14.42306 -13.68500 -13.34154 -12.89597 -12.72745 -12.41369 -12.13523 -11.68184 -11.34783 -11.15521 -11.01139 -10.95440 -10.71970 -10.65235 -10.32608 -10.23658 -9.07952 -9.03811 -8.56349 -8.52079 -7.91052 -6.12506 -4.22067 3.25282 3.30586 3.31532 3.36762 3.98174 4.26731 4.40552 4.65068 4.91274 5.12500 5.19776 5.31205 5.42011 5.60386 5.66250 5.89529 6.01697 6.10796 6.36762 6.73045 6.81715 6.95543 7.14555 7.29526 7.45952 7.55686 7.69017 7.91004 8.14574 8.66639 8.77734 9.12842 9.45635 10.93486 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.051498 B = 0.007160 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.578707 B = 3909.603230 C = 4280.706012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.707 5.707 13 C 0.512 3.488 14 O -0.554 6.554 15 C -0.147 4.147 16 H 0.094 0.906 17 C -0.121 4.121 18 C 0.046 3.954 19 N -0.685 5.685 20 C 0.061 3.939 21 H 0.090 0.910 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.265 0.735 25 H 0.388 0.612 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.337 0.663 31 H 0.074 0.926 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -5.979 -11.376 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.296 3.704 14 O -0.433 6.433 15 C -0.170 4.170 16 H 0.112 0.888 17 C -0.160 4.160 18 C -0.083 4.083 19 N -0.313 5.313 20 C -0.068 4.068 21 H 0.109 0.891 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.220 0.780 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.152 0.848 31 H 0.092 0.908 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.720 -4.519 -11.153 12.596 hybrid contribution -0.529 -1.512 0.852 1.815 sum 3.191 -6.031 -10.301 12.356 Atomic orbital electron populations 1.22077 0.98538 0.99056 1.00876 1.18741 0.90982 0.94014 0.80086 0.93395 1.21182 1.32522 1.13241 0.90353 0.92127 1.24892 0.94798 0.94952 0.99073 1.69891 1.35822 1.22407 1.24004 0.86501 0.79188 0.79560 0.81797 1.20143 1.21111 1.20181 1.46529 1.64908 1.13471 1.10559 1.20071 0.78531 0.87370 0.84456 1.90644 1.51333 1.16160 1.85124 1.22954 0.98778 0.99809 0.95426 0.88832 1.22642 0.98816 1.00200 0.94296 1.22666 0.93372 0.97031 0.95215 1.61722 1.53374 1.13881 1.02274 1.22833 0.91179 1.02109 0.90727 0.89145 0.96721 0.95515 0.92503 0.78022 0.89418 0.90890 0.93010 0.90610 0.84812 0.90797 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.59 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16 13 C 0.51 10.25 7.11 -10.98 -0.08 10.17 16 14 O -0.55 -13.43 15.38 5.56 0.09 -13.34 16 15 C -0.15 -2.13 3.43 -89.63 -0.31 -2.44 16 16 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.12 -1.65 6.07 -24.91 -0.15 -1.81 16 18 C 0.05 0.52 7.58 -2.84 -0.02 0.49 16 19 N -0.68 -7.96 7.39 -110.79 -0.82 -8.78 16 20 C 0.06 0.80 7.03 -2.30 -0.02 0.79 16 21 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.39 6.94 8.54 -40.82 -0.35 6.60 16 26 H 0.09 1.41 7.39 -51.93 -0.38 1.02 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.34 3.13 8.91 -39.29 -0.35 2.78 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.29 8.03 -51.93 -0.42 0.88 16 LS Contribution 266.65 15.07 4.02 4.02 Total: -1.00 -30.54 266.65 -6.90 -37.44 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.71 Total: 6.84 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.80 Total: -2.38 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.47 Total: -48.22 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.54 -6.90 -37.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062116752.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.735 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds