Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46600 * 2 1 4 4 C 1.50697 * 109.46993 * 119.99772 * 2 1 3 5 5 H 1.08004 * 119.99983 * 120.00589 * 4 2 1 6 6 C 1.37878 * 120.00146 * 299.99815 * 4 2 1 7 7 N 1.31513 * 119.99815 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00008 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47115 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47296 * 120.00378 * 8 6 4 11 11 H 1.48508 * 109.46890 * 240.00149 * 8 6 4 12 12 N 1.46498 * 109.47322 * 240.00082 * 2 1 3 13 13 C 1.46500 * 119.99703 * 299.99952 * 12 2 1 14 14 C 1.34774 * 120.00190 * 119.99738 * 12 2 1 15 15 O 1.21586 * 120.00140 * 359.97438 * 14 12 2 16 16 N 1.34779 * 119.99580 * 180.02562 * 14 12 2 17 17 C 1.46506 * 119.99461 * 180.02562 * 16 14 12 18 18 C 1.53001 * 117.49681 * 223.62047 * 17 16 14 19 19 C 1.52999 * 59.99986 * 252.51359 * 18 17 16 20 20 H 1.09002 * 109.47150 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47228 * 300.00287 * 1 2 3 22 22 H 1.09003 * 109.47546 * 60.00294 * 1 2 3 23 23 H 0.97001 * 119.99692 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.47374 * 270.00110 * 13 12 2 25 25 H 1.09000 * 109.47359 * 29.99602 * 13 12 2 26 26 H 1.08998 * 109.47513 * 150.00026 * 13 12 2 27 27 H 0.96995 * 120.00725 * 0.02562 * 16 14 12 28 28 H 1.08998 * 115.55053 * 9.32545 * 17 16 14 29 29 H 1.09004 * 117.49834 * 359.97438 * 18 17 16 30 30 H 1.08997 * 117.49999 * 145.01929 * 18 17 16 31 31 H 1.08998 * 117.49443 * 252.51298 * 19 18 17 32 32 H 1.08998 * 117.52032 * 107.48340 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6038 10 1 3.1472 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8166 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1286 -1.8912 16 7 3.2420 -0.6709 -3.1840 17 6 4.0847 0.0410 -4.1481 18 6 3.7783 -0.1551 -5.6342 19 6 5.0238 -0.7962 -5.0188 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 0.7081 1.1610 3.4844 24 1 2.4157 -2.7377 -0.9716 25 1 0.6905 -2.3002 -0.9845 26 1 1.6238 -2.2853 -2.5001 27 1 3.0071 -1.5993 -3.3379 28 1 4.4343 1.0236 -3.8314 29 1 2.9500 -0.8141 -5.8946 30 1 3.9261 0.6986 -6.2955 31 1 5.9910 -0.3641 -5.2753 32 1 5.0149 -1.8765 -4.8741 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = -19.177942 kcal Electronic energy + Delta-G solvation = -14371.603392 eV Core-core repulsion = 11946.625754 eV Total energy + Delta-G solvation = -2424.977638 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.11469 -38.30898 -36.96959 -34.98530 -33.47148 -30.84772 -27.65721 -27.26851 -23.99577 -23.21118 -22.21313 -20.87811 -18.92792 -18.34041 -17.66860 -16.75096 -16.32092 -15.84122 -15.46589 -14.81613 -14.42313 -14.20564 -13.69512 -13.47094 -13.01358 -12.92555 -12.71060 -12.59708 -12.43317 -12.29568 -12.15430 -12.09553 -11.41282 -11.17038 -11.05625 -10.51841 -9.80155 -9.15816 -8.12961 -6.29631 1.41596 1.43105 1.54589 1.83885 2.21112 2.43266 3.08653 3.14393 3.16178 3.85391 4.12864 4.16400 4.34448 4.62276 4.73408 4.79615 4.86122 4.90490 5.00822 5.05264 5.08089 5.26125 5.45004 5.55605 5.66332 5.71301 6.01444 6.17842 6.31917 6.78781 7.20449 7.38419 7.73970 8.91585 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.049465 B = 0.007429 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.923283 B = 3768.024932 C = 3867.764983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H 0.008 0.992 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.618 5.618 13 C 0.087 3.913 14 C 0.692 3.308 15 O -0.650 6.650 16 N -0.706 5.706 17 C 0.061 3.939 18 C -0.180 4.180 19 C -0.168 4.168 20 H 0.049 0.951 21 H 0.068 0.932 22 H 0.019 0.981 23 H 0.265 0.735 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.409 0.591 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 -8.337 -13.004 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.173 3.827 3 H 0.026 0.974 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.352 5.352 13 C -0.056 4.056 14 C 0.394 3.606 15 O -0.533 6.533 16 N -0.362 5.362 17 C -0.046 4.046 18 C -0.218 4.218 19 C -0.206 4.206 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.247 0.753 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.353 -7.424 -12.698 15.087 hybrid contribution 0.072 -0.344 1.005 1.065 sum 3.426 -7.768 -11.694 14.450 Atomic orbital electron populations 1.21888 0.97087 1.00179 0.99920 1.18452 0.91477 0.91921 0.80813 0.97434 1.21624 1.31755 1.12983 0.91194 0.92266 1.25759 0.95126 0.95683 1.02058 1.70035 1.37410 1.23957 1.24380 0.85370 0.78216 0.78401 0.78768 1.19011 1.21155 1.19816 1.47411 1.51538 1.13279 1.23002 1.21698 1.01871 0.80658 1.01367 1.16185 0.79347 0.84457 0.80629 1.90803 1.65300 1.18376 1.78804 1.44430 1.54637 1.15365 1.21813 1.21452 0.98549 0.98003 0.86602 1.23507 0.99874 1.04145 0.94299 1.23471 0.95578 1.00248 1.01345 0.93183 0.91284 0.96212 0.92618 0.92838 0.90659 0.89562 0.75295 0.87588 0.87602 0.87083 0.86693 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.95 71.98 0.64 -5.89 16 2 C 0.28 14.93 2.64 44.24 0.12 15.05 16 3 H 0.01 0.50 6.90 -2.39 -0.02 0.48 16 4 C -0.54 -29.98 8.37 25.60 0.21 -29.77 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 N -0.62 -27.44 2.75 -844.85 -2.33 -29.76 16 13 C 0.09 2.78 9.44 127.77 1.21 3.98 16 14 C 0.69 31.02 8.28 179.05 1.48 32.50 16 15 O -0.65 -35.90 15.24 -3.99 -0.06 -35.96 16 16 N -0.71 -22.48 5.43 -457.80 -2.49 -24.97 16 17 C 0.06 1.68 6.43 44.99 0.29 1.97 16 18 C -0.18 -3.38 10.46 30.59 0.32 -3.06 16 19 C -0.17 -3.03 10.45 30.59 0.32 -2.71 16 20 H 0.05 2.21 6.66 -2.39 -0.02 2.20 16 21 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 22 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 2.42 6.43 -2.39 -0.02 2.40 16 26 H 0.09 1.99 6.36 -2.39 -0.02 1.98 16 27 H 0.41 9.98 6.56 -92.71 -0.61 9.37 16 28 H 0.11 3.57 7.40 -2.39 -0.02 3.55 16 29 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -72.25 267.10 2.95 -69.30 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.51 Total: 16.08 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 5.04 Total: 13.23 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -4.57 Total: -108.42 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.06 Total: -35.96 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.25 2.95 -69.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.124 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds