Wall clock time and date at job start Mon Mar 30 2020 02:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.47312 * 2 1 4 4 C 1.36934 * 119.99735 * 264.51299 * 3 2 1 5 5 H 1.07998 * 119.99938 * 145.09944 * 4 3 2 6 6 C 1.38816 * 119.99924 * 325.09330 * 4 3 2 7 7 N 1.31621 * 120.00350 * 338.62425 * 6 4 3 8 8 Si 1.86801 * 119.99862 * 158.62479 * 6 4 3 9 9 H 1.48495 * 109.47399 * 89.99951 * 8 6 4 10 10 H 1.48503 * 109.47195 * 210.00110 * 8 6 4 11 11 H 1.48505 * 109.46973 * 329.99991 * 8 6 4 12 12 C 1.46496 * 120.00112 * 84.50927 * 3 2 1 13 13 H 1.09000 * 110.43774 * 2.54406 * 12 3 2 14 14 C 1.54623 * 110.48707 * 240.00101 * 12 3 2 15 15 C 1.54475 * 101.76914 * 266.12152 * 14 12 3 16 16 N 1.46771 * 105.54397 * 334.53845 * 15 14 12 17 17 C 1.46503 * 124.34710 * 197.07592 * 16 15 14 18 18 C 1.34614 * 111.18471 * 17.05681 * 16 15 14 19 19 O 1.21275 * 124.91251 * 179.57614 * 18 16 15 20 20 H 1.08993 * 109.47081 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47214 * 300.00318 * 1 2 3 22 22 H 1.09003 * 109.47010 * 59.99841 * 1 2 3 23 23 H 1.09004 * 109.47214 * 239.99682 * 2 1 3 24 24 H 1.08999 * 109.47084 * 119.99664 * 2 1 3 25 25 H 0.96991 * 120.00036 * 179.97438 * 7 6 4 26 26 H 1.09000 * 110.97312 * 147.99558 * 14 12 3 27 27 H 1.09008 * 110.97015 * 24.23686 * 14 12 3 28 28 H 1.09001 * 110.24946 * 93.57606 * 15 14 12 29 29 H 1.09000 * 110.24810 * 215.49624 * 15 14 12 30 30 H 1.08990 * 109.47183 * 90.00081 * 17 16 15 31 31 H 1.09001 * 109.46802 * 210.00131 * 17 16 15 32 32 H 1.09001 * 109.46909 * 330.00097 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3535 1.9889 -1.1805 5 1 2.1704 3.0447 -1.3154 6 6 2.9288 1.2479 -2.2037 7 7 3.5332 0.1105 -1.9330 8 14 2.8452 1.8651 -3.9648 9 1 4.0302 2.7137 -4.2488 10 1 2.8309 0.7076 -4.8949 11 1 1.6077 2.6649 -4.1508 12 6 2.1481 2.1123 1.2629 13 1 1.8838 1.4704 2.1032 14 6 1.2606 3.3784 1.2489 15 6 2.2555 4.4553 0.7623 16 7 3.5849 3.9630 1.1424 17 6 4.7877 4.7969 1.2076 18 6 3.5543 2.6468 1.4232 19 8 4.5148 1.9857 1.7567 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9349 -0.4074 -2.6480 26 1 0.8943 3.6091 2.2492 27 1 0.4330 3.2669 0.5482 28 1 2.1902 4.5678 -0.3199 29 1 2.0512 5.4069 1.2531 30 1 4.8839 5.2182 2.2082 31 1 5.6640 4.1887 0.9835 32 1 4.7098 5.6043 0.4794 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070583525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:39 Heat of formation + Delta-G solvation = -7.057182 kcal Electronic energy + Delta-G solvation = -15118.634505 eV Core-core repulsion = 12694.182462 eV Total energy + Delta-G solvation = -2424.452043 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.54191 -35.87423 -35.04704 -31.97059 -31.02728 -28.60962 -26.42845 -25.87731 -23.67071 -21.26635 -20.35701 -18.75307 -16.58930 -16.05301 -15.66903 -14.67890 -14.28876 -13.80829 -13.44734 -13.24266 -12.66579 -12.43142 -12.08206 -11.99639 -11.80828 -11.49887 -11.30883 -11.04748 -10.74474 -10.68268 -10.50349 -10.01882 -9.94488 -9.58717 -8.96413 -8.41466 -7.93873 -6.61653 -5.80996 -3.38416 3.32957 3.40311 3.41827 3.56865 3.82792 4.45682 5.21276 5.25944 5.34479 5.43454 5.60257 5.79221 5.88510 5.99968 6.06681 6.15493 6.29562 6.36665 6.44872 6.55173 6.66103 6.75734 6.88767 7.25705 7.31539 7.73982 7.80120 7.93502 8.45983 9.11079 9.19881 9.75168 10.32026 11.19642 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.025098 B = 0.014626 C = 0.011938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.364494 B = 1913.911723 C = 2344.903531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 N -0.558 5.558 4 C -0.267 4.267 5 H 0.068 0.932 6 C 0.014 3.986 7 N -0.878 5.878 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.143 3.857 13 H 0.081 0.919 14 C -0.148 4.148 15 C 0.115 3.885 16 N -0.627 5.627 17 C 0.102 3.898 18 C 0.520 3.480 19 O -0.542 6.542 20 H 0.035 0.965 21 H 0.034 0.966 22 H 0.049 0.951 23 H 0.099 0.901 24 H 0.023 0.977 25 H 0.256 0.744 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 7.174 4.330 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 N -0.278 5.278 4 C -0.396 4.396 5 H 0.085 0.915 6 C -0.187 4.187 7 N -0.520 5.520 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.031 3.969 13 H 0.099 0.901 14 C -0.188 4.188 15 C -0.008 4.008 16 N -0.363 5.363 17 C -0.040 4.040 18 C 0.307 3.693 19 O -0.417 6.417 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.117 0.883 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.149 6.700 4.393 9.023 hybrid contribution 0.150 0.433 -1.070 1.164 sum -3.999 7.134 3.322 8.827 Atomic orbital electron populations 1.22320 1.00479 0.98877 1.00467 1.21013 0.89833 0.85493 1.02156 1.43837 1.72777 1.11647 0.99563 1.19070 1.35637 0.94845 0.90089 0.91463 1.25213 0.96319 0.97820 0.99382 1.70033 1.34822 1.15656 1.31459 0.86402 0.78038 0.78038 0.84908 1.21340 1.21396 1.20166 1.21199 0.90082 0.93323 0.92294 0.90079 1.23048 0.98499 0.96362 1.00869 1.21959 0.81990 0.96576 1.00290 1.48151 1.08809 1.10186 1.69178 1.21337 0.87983 0.94692 1.00017 1.22083 0.92743 0.80738 0.73778 1.90581 1.41409 1.61646 1.48085 0.94563 0.94718 0.93158 0.88305 0.95830 0.93428 0.91626 0.89114 0.91097 0.92430 0.93819 0.91343 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.23 37.16 0.38 -2.76 16 2 C 0.14 3.32 5.92 -4.04 -0.02 3.30 16 3 N -0.56 -13.69 2.44 -165.67 -0.40 -14.10 16 4 C -0.27 -7.03 8.27 -15.06 -0.12 -7.16 16 5 H 0.07 1.72 5.49 -52.49 -0.29 1.43 16 6 C 0.01 0.38 4.93 -17.43 -0.09 0.30 16 7 N -0.88 -25.78 11.36 55.49 0.63 -25.15 16 8 Si 0.90 21.37 29.60 -169.99 -5.03 16.34 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.14 3.07 3.57 -67.95 -0.24 2.83 16 13 H 0.08 1.66 7.91 -51.93 -0.41 1.25 16 14 C -0.15 -2.48 6.47 -25.10 -0.16 -2.64 16 15 C 0.11 1.90 6.64 -3.12 -0.02 1.88 16 16 N -0.63 -12.27 3.34 -180.23 -0.60 -12.87 16 17 C 0.10 1.67 10.97 59.85 0.66 2.32 16 18 C 0.52 12.27 6.99 -10.77 -0.08 12.19 16 19 O -0.54 -14.99 17.60 5.56 0.10 -14.89 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.10 2.65 5.38 -51.93 -0.28 2.37 16 24 H 0.02 0.55 8.04 -51.93 -0.42 0.13 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.54 8.08 -51.92 -0.42 1.12 16 28 H 0.07 1.25 6.38 -51.93 -0.33 0.92 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.24 7.93 -51.93 -0.41 0.82 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 264.17 15.07 3.98 3.98 Total: -1.00 -32.38 264.17 -5.68 -38.06 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.65 Total: -1.63 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 0.30 Total: 10.27 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.38 Total: -52.12 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.10 Total: -14.89 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.38 -5.68 -38.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070583525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.001 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds