Wall clock time and date at job start Mon Mar 30 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 5 5 H 1.07996 * 120.00253 * 119.99870 * 4 2 1 6 6 C 1.37878 * 119.99674 * 300.00113 * 4 2 1 7 7 N 1.31513 * 120.00353 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99967 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47200 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47268 * 119.99842 * 8 6 4 11 11 H 1.48506 * 109.47301 * 239.99804 * 8 6 4 12 12 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 13 13 C 1.46901 * 110.99793 * 85.00144 * 12 2 1 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 2 15 15 H 1.08993 * 110.22080 * 65.47318 * 14 13 12 16 16 C 1.54485 * 110.24212 * 187.49782 * 14 13 12 17 17 C 1.54627 * 101.76235 * 144.41430 * 16 14 13 18 18 C 1.51273 * 104.19937 * 335.19884 * 17 16 14 19 19 O 1.21278 * 124.94509 * 196.22952 * 18 17 16 20 20 N 1.34423 * 110.11509 * 16.25732 * 18 17 16 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 24 24 H 0.97002 * 120.00598 * 179.97438 * 7 6 4 25 25 H 1.00898 * 110.99995 * 208.95221 * 12 2 1 26 26 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 27 27 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 28 28 H 1.08998 * 110.96470 * 262.52920 * 16 14 13 29 29 H 1.08994 * 110.97033 * 26.29547 * 16 14 13 30 30 H 1.09006 * 110.48711 * 216.52011 * 17 16 14 31 31 H 1.08997 * 110.60007 * 93.93507 * 17 16 14 32 32 H 0.97003 * 124.34821 * 180.43420 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1456 -2.2877 3.6037 10 1 3.1467 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8161 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5949 -0.5333 -3.5745 15 1 1.8781 -1.2984 -3.8722 16 6 2.8466 0.4487 -4.7402 17 6 4.0924 -0.1731 -5.4128 18 6 4.7575 -0.9607 -4.3057 19 8 5.8993 -1.3688 -4.3328 20 7 3.8987 -1.1430 -3.2877 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7089 1.1614 3.4844 25 1 2.9172 -1.1205 -1.0288 26 1 2.7588 1.0462 -2.1183 27 1 1.0870 0.6163 -2.5525 28 1 1.9999 0.4647 -5.4264 29 1 3.0634 1.4496 -4.3672 30 1 4.7586 0.6084 -5.7784 31 1 3.7983 -0.8344 -6.2278 32 1 4.1134 -1.6163 -2.4687 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070621894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:28 Heat of formation + Delta-G solvation = -44.850556 kcal Electronic energy + Delta-G solvation = -14120.969163 eV Core-core repulsion = 11694.878277 eV Total energy + Delta-G solvation = -2426.090886 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.20684 -36.98200 -35.36179 -32.56406 -31.23184 -29.69900 -27.08830 -25.26788 -23.27217 -21.13221 -20.50535 -19.63716 -17.20415 -16.84480 -16.14950 -14.90765 -14.80199 -14.35137 -13.91570 -13.50780 -13.38603 -12.81454 -12.57167 -12.47870 -11.71069 -11.60985 -11.20672 -11.08925 -10.88902 -10.71318 -10.35039 -10.19943 -9.95829 -9.76701 -8.98005 -8.86963 -8.54035 -7.43519 -6.09142 -4.16055 2.69997 3.25358 3.33512 3.37655 3.51950 4.31646 4.39482 4.50514 4.72076 5.04174 5.22696 5.34072 5.42137 5.55120 5.64462 5.71830 5.93928 6.11342 6.27750 6.79004 6.93892 7.04929 7.13461 7.18902 7.39734 7.70823 7.79784 8.17298 8.25052 8.36937 8.54124 8.93013 9.50527 10.97176 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044299 B = 0.006828 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.922637 B = 4099.647148 C = 4579.613885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.688 5.688 13 C 0.051 3.949 14 C 0.132 3.868 15 H 0.088 0.912 16 C -0.129 4.129 17 C -0.155 4.155 18 C 0.516 3.484 19 O -0.547 6.547 20 N -0.719 5.719 21 H 0.081 0.919 22 H 0.004 0.996 23 H 0.032 0.968 24 H 0.261 0.739 25 H 0.326 0.674 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 0.204 -12.557 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.319 5.319 13 C -0.080 4.080 14 C 0.026 3.974 15 H 0.106 0.894 16 C -0.168 4.168 17 C -0.196 4.196 18 C 0.302 3.698 19 O -0.426 6.426 20 N -0.375 5.375 21 H 0.099 0.901 22 H 0.024 0.976 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.704 -0.074 -12.687 12.707 hybrid contribution 0.990 -0.037 1.547 1.837 sum 1.694 -0.110 -11.140 11.268 Atomic orbital electron populations 1.21713 0.97693 0.99425 0.99431 1.19129 0.92722 0.92356 0.85427 0.98038 1.21285 1.31603 1.12592 0.90462 0.92179 1.24918 0.94965 0.94965 0.99116 1.69898 1.36571 1.22847 1.23478 0.86460 0.78641 0.79636 0.82785 1.19727 1.21047 1.20901 1.60805 1.31605 1.33154 1.06384 1.22282 1.00440 0.94242 0.91036 1.21872 0.84687 0.95337 0.95488 0.89438 1.22695 0.97867 0.99331 0.96879 1.22323 0.98352 1.00894 0.97988 1.20899 0.85057 0.79392 0.84469 1.90732 1.17568 1.53360 1.80892 1.46414 1.13751 1.57069 1.20281 0.90056 0.97646 0.94888 0.92900 0.85644 0.95496 0.90256 0.89141 0.89829 0.88349 0.88016 0.74788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.19 37.16 0.34 -2.64 16 2 C 0.21 5.16 2.60 -68.86 -0.18 4.98 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.02 8.59 -34.44 -0.30 -14.32 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.69 -13.61 6.30 -107.95 -0.68 -14.29 16 13 C 0.05 0.80 5.21 -3.82 -0.02 0.78 16 14 C 0.13 1.63 3.82 -67.01 -0.26 1.37 16 15 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 16 C -0.13 -1.21 6.69 -25.10 -0.17 -1.38 16 17 C -0.16 -1.56 6.86 -26.75 -0.18 -1.74 16 18 C 0.52 7.51 8.43 -10.86 -0.09 7.42 16 19 O -0.55 -10.21 18.03 5.56 0.10 -10.11 16 20 N -0.72 -10.00 5.73 -52.77 -0.30 -10.30 16 21 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 22 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.33 6.34 6.59 -39.29 -0.26 6.09 16 26 H 0.03 0.45 7.95 -51.93 -0.41 0.04 16 27 H 0.08 1.23 7.44 -51.93 -0.39 0.85 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.78 7.84 -51.93 -0.41 0.38 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.41 5.99 7.50 -40.82 -0.31 5.69 16 LS Contribution 264.19 15.07 3.98 3.98 Total: -1.00 -30.48 264.19 -6.77 -37.24 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.53 Total: 5.74 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -0.95 Total: -3.91 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.35 Total: -49.01 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.10 Total: -10.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.48 -6.77 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070621894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.607 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds