Wall clock time and date at job start Mon Mar 30 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 5 5 H 1.07996 * 120.00253 * 119.99870 * 4 2 1 6 6 C 1.37878 * 119.99674 * 300.00113 * 4 2 1 7 7 N 1.31513 * 120.00353 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99967 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47200 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47268 * 119.99842 * 8 6 4 11 11 H 1.48506 * 109.47301 * 239.99804 * 8 6 4 12 12 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 13 13 C 1.46901 * 110.99793 * 85.00144 * 12 2 1 14 14 C 1.53000 * 109.46769 * 180.02562 * 13 12 2 15 15 H 1.08993 * 110.22080 * 65.47318 * 14 13 12 16 16 C 1.54485 * 110.24212 * 187.49782 * 14 13 12 17 17 C 1.54627 * 101.76235 * 144.41430 * 16 14 13 18 18 C 1.51273 * 104.19937 * 335.19884 * 17 16 14 19 19 O 1.21278 * 124.94509 * 196.22952 * 18 17 16 20 20 N 1.34423 * 110.11509 * 16.25732 * 18 17 16 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 24 24 H 0.97002 * 120.00598 * 179.97438 * 7 6 4 25 25 H 1.00898 * 110.99995 * 208.95221 * 12 2 1 26 26 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 27 27 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 28 28 H 1.08998 * 110.96470 * 262.52920 * 16 14 13 29 29 H 1.08994 * 110.97033 * 26.29547 * 16 14 13 30 30 H 1.09006 * 110.48711 * 216.52011 * 17 16 14 31 31 H 1.08997 * 110.60007 * 93.93507 * 17 16 14 32 32 H 0.97003 * 124.34821 * 180.43420 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1456 -2.2877 3.6037 10 1 3.1467 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8161 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5949 -0.5333 -3.5745 15 1 1.8781 -1.2984 -3.8722 16 6 2.8466 0.4487 -4.7402 17 6 4.0924 -0.1731 -5.4128 18 6 4.7575 -0.9607 -4.3057 19 8 5.8993 -1.3688 -4.3328 20 7 3.8987 -1.1430 -3.2877 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7089 1.1614 3.4844 25 1 2.9172 -1.1205 -1.0288 26 1 2.7588 1.0462 -2.1183 27 1 1.0870 0.6163 -2.5525 28 1 1.9999 0.4647 -5.4264 29 1 3.0634 1.4496 -4.3672 30 1 4.7586 0.6084 -5.7784 31 1 3.7983 -0.8344 -6.2278 32 1 4.1134 -1.6163 -2.4687 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070621894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:28 Heat of formation + Delta-G solvation = -68.139117 kcal Electronic energy + Delta-G solvation = -14121.979031 eV Core-core repulsion = 11694.878277 eV Total energy + Delta-G solvation = -2427.100754 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29005 -38.35099 -36.94946 -34.42293 -32.17143 -31.32216 -28.53826 -27.27761 -24.50966 -22.17023 -21.95478 -21.09987 -18.76850 -18.10644 -17.55047 -16.80136 -15.95820 -15.85232 -15.48970 -14.81167 -14.68674 -14.26269 -13.86118 -13.40930 -13.29492 -13.00152 -12.98364 -12.72030 -12.42626 -12.20736 -12.15957 -11.90985 -11.59701 -10.92793 -10.88331 -10.60603 -10.09064 -9.10989 -8.16485 -6.30371 1.38852 1.41337 1.52291 1.59263 2.38660 2.44493 3.12457 3.34561 3.62927 3.67407 4.10060 4.26496 4.33848 4.55759 4.68314 4.85408 4.91970 4.94341 5.08614 5.13540 5.22586 5.27584 5.47215 5.64052 5.82443 5.87193 6.09128 6.22075 6.39784 6.73177 6.94333 7.23362 7.40325 8.89079 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044299 B = 0.006828 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.922637 B = 4099.647148 C = 4579.613885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.030 1.030 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.685 5.685 13 C 0.052 3.948 14 C 0.136 3.864 15 H 0.101 0.899 16 C -0.117 4.117 17 C -0.143 4.143 18 C 0.504 3.496 19 O -0.597 6.597 20 N -0.724 5.724 21 H 0.054 0.946 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.263 0.737 25 H 0.326 0.674 26 H 0.016 0.984 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 0.066 -13.904 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.012 1.012 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.316 5.316 13 C -0.079 4.079 14 C 0.032 3.968 15 H 0.118 0.882 16 C -0.155 4.155 17 C -0.183 4.183 18 C 0.293 3.707 19 O -0.479 6.479 20 N -0.377 5.377 21 H 0.073 0.927 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.034 0.966 27 H 0.105 0.895 28 H 0.144 0.856 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.240 -0.205 -14.054 14.058 hybrid contribution 1.114 0.019 1.955 2.250 sum 1.354 -0.185 -12.099 12.176 Atomic orbital electron populations 1.21528 0.97287 0.99002 0.99323 1.18929 0.93032 0.90721 0.86744 1.01208 1.21642 1.31697 1.12692 0.91838 0.92480 1.25691 0.95171 0.95664 1.01964 1.70014 1.37399 1.23953 1.24150 0.85487 0.78158 0.78582 0.79266 1.19300 1.20736 1.20414 1.60706 1.31667 1.33477 1.05751 1.22380 1.00900 0.93729 0.90859 1.21948 0.83984 0.96066 0.94842 0.88164 1.22744 0.98784 0.98190 0.95819 1.22365 0.98212 1.00941 0.96788 1.21749 0.84446 0.79008 0.85513 1.90700 1.19742 1.55495 1.82003 1.46611 1.14451 1.56620 1.20030 0.92711 0.95178 0.95265 0.92792 0.85627 0.96615 0.89479 0.85610 0.89725 0.86998 0.85482 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.39 9.19 71.98 0.66 -4.73 16 2 C 0.21 10.54 2.60 44.17 0.11 10.66 16 3 H -0.03 -1.62 7.80 -2.39 -0.02 -1.64 16 4 C -0.54 -29.32 8.59 25.60 0.22 -29.10 16 5 H 0.06 3.05 7.62 -2.91 -0.02 3.03 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.13 11.32 21.45 0.24 -51.89 16 8 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.68 -26.77 6.30 -495.43 -3.12 -29.89 16 13 C 0.05 1.56 5.21 86.30 0.45 2.01 16 14 C 0.14 3.04 3.82 45.45 0.17 3.21 16 15 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.12 -1.74 6.69 31.65 0.21 -1.53 16 17 C -0.14 -2.39 6.86 30.58 0.21 -2.18 16 18 C 0.50 14.09 8.43 87.89 0.74 14.83 16 19 O -0.60 -22.32 18.03 -3.02 -0.05 -22.37 16 20 N -0.72 -19.37 5.73 -439.44 -2.52 -21.89 16 21 H 0.05 2.91 6.07 -2.39 -0.01 2.89 16 22 H 0.03 1.23 7.45 -2.39 -0.02 1.22 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.33 12.71 6.59 -89.70 -0.59 12.12 16 26 H 0.02 0.51 7.95 -2.39 -0.02 0.50 16 27 H 0.09 2.51 7.44 -2.39 -0.02 2.49 16 28 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.29 7.84 -2.39 -0.02 1.27 16 30 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.40 11.76 7.50 -92.71 -0.70 11.06 16 Total: -1.00 -66.51 264.19 -0.35 -66.87 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.16 Total: 19.40 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 3.23 Total: -5.59 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -5.39 Total: -103.67 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.51 -0.35 -66.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070621894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.273 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds