Wall clock time and date at job start Mon Mar 30 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99598 * 2 1 4 4 C 1.50701 * 109.47455 * 270.00270 * 3 2 1 5 5 H 1.08003 * 119.99533 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00265 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99743 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46985 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46785 * 120.00289 * 8 6 4 11 11 H 1.48495 * 109.47112 * 239.99859 * 8 6 4 12 12 C 1.34769 * 120.00124 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00084 * 179.97438 * 12 2 1 14 14 C 1.50704 * 120.00127 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47137 * 180.02562 * 14 12 2 16 16 C 1.53515 * 114.16965 * 185.00099 * 15 14 12 17 17 N 1.47481 * 87.93334 * 220.32733 * 16 15 14 18 18 C 1.47488 * 87.83530 * 27.00963 * 17 16 15 19 19 H 1.09008 * 109.46938 * 269.99618 * 1 2 3 20 20 H 1.08996 * 109.47228 * 29.99601 * 1 2 3 21 21 H 1.08997 * 109.47173 * 149.99823 * 1 2 3 22 22 H 1.08996 * 109.47355 * 30.00412 * 3 2 1 23 23 H 1.08999 * 109.46930 * 150.00499 * 3 2 1 24 24 H 0.96996 * 119.99863 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.46907 * 60.00203 * 14 12 2 26 26 H 1.08992 * 109.46899 * 300.00228 * 14 12 2 27 27 H 1.09002 * 113.38857 * 318.07934 * 15 14 12 28 28 H 1.09004 * 113.47747 * 105.56637 * 16 15 14 29 29 H 1.08995 * 113.53124 * 335.10698 * 16 15 14 30 30 H 1.00901 * 110.99857 * 138.69928 * 17 16 15 31 31 H 1.08996 * 113.47304 * 87.75121 * 18 17 16 32 32 H 1.08997 * 113.47652 * 218.22256 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8777 -1.6727 7 7 3.5540 3.6178 -0.6730 8 14 3.4385 3.4166 -3.4339 9 1 2.8604 2.4167 -4.3672 10 1 2.8014 4.7375 -3.6674 11 1 4.9011 3.5245 -3.6669 12 6 2.1389 -1.1671 -0.0005 13 8 3.3516 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6351 -0.0005 16 6 1.7277 -5.0196 -0.1226 17 7 2.7016 -5.5070 0.8719 18 6 2.7666 -4.1313 1.3997 19 1 -0.3633 -0.0001 1.0278 20 1 -0.3633 0.8900 -0.5137 21 1 -0.3633 -0.8899 -0.5138 22 1 1.6084 2.0284 0.5139 23 1 3.1499 1.1384 0.5138 24 1 4.0314 4.4433 -0.8502 25 1 0.7585 -2.5298 -0.8903 26 1 0.7591 -2.5302 0.8896 27 1 3.2267 -3.4802 -0.6689 28 1 1.8493 -5.4716 -1.1070 29 1 0.6966 -5.0476 0.2295 30 1 2.2618 -6.1280 1.5344 31 1 2.0128 -3.9213 2.1584 32 1 3.7687 -3.8305 1.7055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081746121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:28 Heat of formation + Delta-G solvation = -5.340928 kcal Electronic energy + Delta-G solvation = -14170.050978 eV Core-core repulsion = 11745.673358 eV Total energy + Delta-G solvation = -2424.377620 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91845 -38.38624 -34.76430 -32.65260 -31.06034 -27.82932 -25.98385 -25.76572 -24.90436 -22.47103 -19.50486 -18.46634 -16.54654 -16.40953 -16.13326 -15.54966 -15.04456 -14.63674 -14.00787 -13.70014 -12.80882 -12.66768 -12.33026 -12.18671 -11.85248 -11.74831 -11.45053 -11.12227 -10.89767 -10.79227 -10.54787 -10.30468 -10.14506 -9.59422 -9.10146 -8.81069 -8.42980 -7.61779 -6.03484 -4.08176 3.30376 3.37639 3.41026 3.48655 3.95945 4.20495 4.45055 4.55678 4.82914 5.20085 5.23935 5.31213 5.41154 5.57344 5.59381 5.61252 5.76580 5.87824 5.90653 5.96096 6.08909 6.21406 6.45879 7.07538 7.18984 7.46079 7.56517 7.93294 8.24817 8.45054 8.92062 9.13486 9.57126 11.04687 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047926 B = 0.006825 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.090990 B = 4101.758406 C = 4233.091178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.503 3.497 13 O -0.540 6.540 14 C -0.132 4.132 15 C -0.095 4.095 16 C 0.001 3.999 17 N -0.630 5.630 18 C 0.006 3.994 19 H 0.043 0.957 20 H 0.073 0.927 21 H 0.056 0.944 22 H 0.031 0.969 23 H 0.043 0.957 24 H 0.263 0.737 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.315 0.685 31 H 0.062 0.938 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 -12.574 2.761 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.417 6.417 14 C -0.172 4.172 15 C -0.114 4.114 16 C -0.129 4.129 17 N -0.253 5.253 18 C -0.124 4.124 19 H 0.061 0.939 20 H 0.092 0.908 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.903 -12.570 2.402 14.540 hybrid contribution -0.869 0.649 -0.436 1.169 sum -7.772 -11.920 1.966 14.365 Atomic orbital electron populations 1.21622 0.81588 1.02531 1.00270 1.48178 1.06098 1.07959 1.71543 1.19284 0.92571 0.78201 0.97488 1.21478 1.36344 1.06212 0.92342 0.92453 1.24947 0.95379 0.96409 0.97454 1.69945 1.38474 1.14375 1.30668 0.86437 0.78109 0.78272 0.84576 1.19816 1.20973 1.20844 1.20299 0.88175 0.85072 0.77487 1.90664 1.13921 1.87195 1.49949 1.21689 0.98719 0.93377 1.03436 1.22530 0.98947 0.91653 0.98263 1.23694 0.95040 0.95607 0.98587 1.67324 1.37840 1.07403 1.12783 1.23658 1.02678 0.89429 0.96632 0.93894 0.90840 0.92483 0.95100 0.93851 0.92780 0.89081 0.89776 0.86883 0.89879 0.91830 0.87338 0.91961 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.61 -12.88 2.86 -182.96 -0.52 -13.40 16 3 C 0.24 6.46 5.16 -5.19 -0.03 6.44 16 4 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.50 10.39 7.67 -10.99 -0.08 10.30 16 13 O -0.54 -13.60 15.31 5.56 0.09 -13.52 16 14 C -0.13 -1.87 4.16 -27.88 -0.12 -1.99 16 15 C -0.09 -1.34 3.51 -90.09 -0.32 -1.66 16 16 C 0.00 0.01 8.20 -7.54 -0.06 -0.05 16 17 N -0.63 -7.57 8.71 -122.62 -1.07 -8.64 16 18 C 0.01 0.08 8.19 -7.53 -0.06 0.02 16 19 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 20 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 21 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 22 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 23 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.09 1.14 7.40 -51.93 -0.38 0.75 16 26 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 27 H 0.11 1.92 7.63 -51.93 -0.40 1.53 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.31 3.02 8.91 -39.29 -0.35 2.67 16 31 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 271.25 15.07 4.09 4.09 Total: -1.00 -33.33 271.25 -6.91 -40.24 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.73 Total: -0.87 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.47 Total: 1.23 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.85 Total: -48.21 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.33 -6.91 -40.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081746121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.903 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds