Wall clock time and date at job start Mon Mar 30 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99598 * 2 1 4 4 C 1.50701 * 109.47455 * 270.00270 * 3 2 1 5 5 H 1.08003 * 119.99533 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00265 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99743 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46985 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46785 * 120.00289 * 8 6 4 11 11 H 1.48495 * 109.47112 * 239.99859 * 8 6 4 12 12 C 1.34769 * 120.00124 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00084 * 179.97438 * 12 2 1 14 14 C 1.50704 * 120.00127 * 359.97438 * 12 2 1 15 15 C 1.52996 * 109.47137 * 180.02562 * 14 12 2 16 16 C 1.53515 * 114.16965 * 185.00099 * 15 14 12 17 17 N 1.47481 * 87.93334 * 220.32733 * 16 15 14 18 18 C 1.47488 * 87.83530 * 27.00963 * 17 16 15 19 19 H 1.09008 * 109.46938 * 269.99618 * 1 2 3 20 20 H 1.08996 * 109.47228 * 29.99601 * 1 2 3 21 21 H 1.08997 * 109.47173 * 149.99823 * 1 2 3 22 22 H 1.08996 * 109.47355 * 30.00412 * 3 2 1 23 23 H 1.08999 * 109.46930 * 150.00499 * 3 2 1 24 24 H 0.96996 * 119.99863 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.46907 * 60.00203 * 14 12 2 26 26 H 1.08992 * 109.46899 * 300.00228 * 14 12 2 27 27 H 1.09002 * 113.38857 * 318.07934 * 15 14 12 28 28 H 1.09004 * 113.47747 * 105.56637 * 16 15 14 29 29 H 1.08995 * 113.53124 * 335.10698 * 16 15 14 30 30 H 1.00901 * 110.99857 * 138.69928 * 17 16 15 31 31 H 1.08996 * 113.47304 * 87.75121 * 18 17 16 32 32 H 1.08997 * 113.47652 * 218.22256 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8777 -1.6727 7 7 3.5540 3.6178 -0.6730 8 14 3.4385 3.4166 -3.4339 9 1 2.8604 2.4167 -4.3672 10 1 2.8014 4.7375 -3.6674 11 1 4.9011 3.5245 -3.6669 12 6 2.1389 -1.1671 -0.0005 13 8 3.3516 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3797 -3.6351 -0.0005 16 6 1.7277 -5.0196 -0.1226 17 7 2.7016 -5.5070 0.8719 18 6 2.7666 -4.1313 1.3997 19 1 -0.3633 -0.0001 1.0278 20 1 -0.3633 0.8900 -0.5137 21 1 -0.3633 -0.8899 -0.5138 22 1 1.6084 2.0284 0.5139 23 1 3.1499 1.1384 0.5138 24 1 4.0314 4.4433 -0.8502 25 1 0.7585 -2.5298 -0.8903 26 1 0.7591 -2.5302 0.8896 27 1 3.2267 -3.4802 -0.6689 28 1 1.8493 -5.4716 -1.1070 29 1 0.6966 -5.0476 0.2295 30 1 2.2618 -6.1280 1.5344 31 1 2.0128 -3.9213 2.1584 32 1 3.7687 -3.8305 1.7055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081746121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:28 Heat of formation + Delta-G solvation = -31.745857 kcal Electronic energy + Delta-G solvation = -14171.195982 eV Core-core repulsion = 11745.673358 eV Total energy + Delta-G solvation = -2425.522624 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13507 -39.80910 -36.54378 -34.74958 -32.36499 -29.70726 -27.36474 -26.70809 -26.39991 -24.31934 -20.56876 -20.00425 -18.70381 -17.78152 -17.43723 -16.87739 -16.65339 -16.27444 -15.62920 -14.87128 -14.41332 -14.04261 -13.80017 -13.45500 -13.41011 -13.17413 -13.08079 -12.75140 -12.63491 -12.32395 -12.21706 -11.87308 -11.68567 -11.32481 -10.66076 -10.54742 -9.92166 -9.38980 -8.23420 -6.38630 1.35419 1.38166 1.49958 1.89971 2.33158 2.48744 3.05878 3.26685 3.49365 3.79415 3.93830 4.32856 4.40709 4.48534 4.57038 4.60142 4.74279 4.79654 4.87851 4.91880 4.98713 5.06783 5.14382 5.23805 5.34356 5.56602 5.85786 6.05841 6.41102 6.69946 6.83616 7.28217 7.53979 8.83814 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.047926 B = 0.006825 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.090990 B = 4101.758406 C = 4233.091178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.490 3.510 13 O -0.600 6.600 14 C -0.112 4.112 15 C -0.109 4.109 16 C 0.020 3.980 17 N -0.646 5.646 18 C 0.006 3.994 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.098 0.902 22 H 0.023 0.977 23 H -0.005 1.005 24 H 0.267 0.733 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.332 0.668 31 H 0.088 0.912 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 -13.983 2.032 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.346 5.346 3 C 0.135 3.865 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.280 3.720 13 O -0.482 6.482 14 C -0.152 4.152 15 C -0.129 4.129 16 C -0.110 4.110 17 N -0.271 5.271 18 C -0.124 4.124 19 H 0.089 0.911 20 H 0.081 0.919 21 H 0.117 0.883 22 H 0.041 0.959 23 H 0.013 0.987 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.141 0.859 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.106 0.894 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.439 -14.004 1.682 16.972 hybrid contribution -0.088 1.071 -0.150 1.085 sum -9.527 -12.933 1.532 16.136 Atomic orbital electron populations 1.21949 0.77757 1.04103 1.02609 1.48236 1.08494 1.06398 1.71436 1.18739 0.91072 0.80737 0.95955 1.21749 1.36713 1.06497 0.93089 0.92878 1.25897 0.94905 0.96453 1.02100 1.70062 1.39011 1.14881 1.33054 0.85341 0.77863 0.78451 0.78988 1.19055 1.19253 1.20817 1.21549 0.87940 0.86822 0.75720 1.90635 1.16957 1.88194 1.52425 1.21682 0.98316 0.88700 1.06456 1.22454 0.98442 0.93702 0.98271 1.23663 0.96261 0.92384 0.98701 1.67258 1.39209 1.07087 1.13571 1.23648 1.01816 0.90180 0.96741 0.91087 0.91873 0.88345 0.95947 0.98709 0.92395 0.86235 0.85946 0.91034 0.89534 0.88229 0.85478 0.89379 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 10.24 127.77 1.31 3.52 16 2 N -0.61 -26.00 2.86 -851.15 -2.43 -28.43 16 3 C 0.26 14.14 5.16 85.63 0.44 14.58 16 4 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.30 5.46 84.65 0.46 0.76 16 7 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 8 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 C 0.49 20.20 7.67 87.66 0.67 20.87 16 13 O -0.60 -31.78 15.31 -3.02 -0.05 -31.82 16 14 C -0.11 -2.84 4.16 29.85 0.12 -2.71 16 15 C -0.11 -2.94 3.51 -10.45 -0.04 -2.97 16 16 C 0.02 0.37 8.20 83.58 0.69 1.05 16 17 N -0.65 -14.13 8.71 -541.87 -4.72 -18.85 16 18 C 0.01 0.16 8.19 83.58 0.68 0.85 16 19 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 20 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 21 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 22 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 23 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 24 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 25 H 0.12 2.41 7.40 -2.39 -0.02 2.39 16 26 H 0.12 2.24 7.77 -2.39 -0.02 2.22 16 27 H 0.07 2.52 7.63 -2.39 -0.02 2.51 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.33 5.34 8.91 -89.69 -0.80 4.55 16 31 H 0.09 1.72 7.87 -2.39 -0.02 1.70 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -77.29 271.25 0.00 -77.29 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.31 Total: 6.84 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.58 Total: 4.36 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -6.87 Total: -104.23 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.05 Total: -31.82 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -77.29 0.00 -77.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081746121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds