Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46728 * 90.00208 * 8 6 4 10 10 H 1.48498 * 109.46997 * 209.99903 * 8 6 4 11 11 H 1.48494 * 109.47182 * 330.00149 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.34773 * 119.99910 * 84.99768 * 12 2 1 14 14 O 1.21277 * 120.00157 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99928 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47295 * 180.02562 * 15 13 12 17 17 C 1.53928 * 113.73340 * 271.72618 * 16 15 13 18 18 N 1.47958 * 86.18476 * 221.91992 * 17 16 15 19 19 C 1.47962 * 90.76184 * 24.68873 * 18 17 16 20 20 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 21 21 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 24 24 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 25 25 H 1.08999 * 109.47104 * 300.00397 * 15 13 12 26 26 H 1.09000 * 109.47712 * 60.00108 * 15 13 12 27 27 H 1.08999 * 112.93648 * 43.43412 * 16 15 13 28 28 H 1.09000 * 113.76530 * 336.24096 * 17 16 15 29 29 H 1.09005 * 113.75886 * 107.60401 * 17 16 15 30 30 H 1.00893 * 111.00466 * 137.58117 * 18 17 16 31 31 H 1.08993 * 113.76408 * 220.99467 * 19 18 17 32 32 H 1.09000 * 113.85900 * 89.63707 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.6306 -0.5439 4.4118 10 1 1.3446 -0.9489 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8590 1.1584 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 2.7009 0.2543 -4.7588 17 6 1.3844 0.3441 -5.5514 18 7 2.2309 0.3571 -6.7648 19 6 3.3163 -0.3390 -6.0391 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7082 1.1609 3.4843 24 1 2.2490 -1.6319 -1.1526 25 1 3.6479 -1.1215 -3.3986 26 1 1.9759 -1.5508 -3.8326 27 1 3.1151 1.2236 -4.4815 28 1 0.7571 -0.5429 -5.4630 29 1 0.8362 1.2721 -5.3885 30 1 1.8408 -0.2329 -7.4843 31 1 4.3116 0.0430 -6.2657 32 1 3.2558 -1.4261 -6.0923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081766444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = -18.422690 kcal Electronic energy + Delta-G solvation = -14063.302372 eV Core-core repulsion = 11638.357484 eV Total energy + Delta-G solvation = -2424.944888 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75773 -38.26157 -34.75957 -32.38653 -31.08278 -28.68516 -25.98317 -25.28961 -24.91941 -21.16843 -19.46000 -19.31942 -17.20093 -16.27723 -15.76712 -15.49465 -15.00958 -14.49820 -14.03509 -13.49264 -12.91543 -12.57681 -12.41293 -12.07524 -11.62451 -11.43008 -11.07564 -10.96467 -10.79258 -10.66419 -10.45615 -10.29651 -10.23110 -9.09328 -9.04739 -8.86273 -8.53944 -7.88075 -6.11960 -4.21345 3.24400 3.30926 3.32672 3.44644 4.06087 4.08708 4.36574 4.62647 4.86779 5.20190 5.25599 5.32951 5.39580 5.59378 5.63032 5.83872 5.91637 5.93887 6.08864 6.42059 6.83391 6.97458 7.16469 7.17549 7.48868 7.57783 7.70580 7.92783 8.16120 8.69826 8.79502 9.17159 9.46606 10.94038 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.073744 B = 0.006036 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.598471 B = 4637.611574 C = 4838.553624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.712 5.712 13 C 0.500 3.500 14 O -0.554 6.554 15 C -0.138 4.138 16 C -0.094 4.094 17 C 0.011 3.989 18 N -0.638 5.638 19 C 0.004 3.996 20 H 0.089 0.911 21 H 0.014 0.986 22 H 0.025 0.975 23 H 0.264 0.736 24 H 0.388 0.612 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.314 0.686 31 H 0.086 0.914 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -5.923 -12.089 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.284 3.716 14 O -0.433 6.433 15 C -0.178 4.178 16 C -0.113 4.113 17 C -0.119 4.119 18 N -0.262 5.262 19 C -0.126 4.126 20 H 0.108 0.892 21 H 0.033 0.967 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.220 0.780 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.472 -4.129 -12.080 13.003 hybrid contribution 0.061 -1.972 1.066 2.243 sum 2.534 -6.101 -11.014 12.843 Atomic orbital electron populations 1.22070 0.98553 0.99007 1.00860 1.18724 0.90986 0.93994 0.80165 0.93444 1.21227 1.32397 1.13194 0.90394 0.92131 1.24901 0.94809 0.94973 0.99073 1.69906 1.35836 1.22514 1.23864 0.86444 0.78613 0.79807 0.82202 1.20555 1.21071 1.19875 1.46549 1.65230 1.13494 1.10690 1.20418 0.78744 0.87622 0.84775 1.90649 1.51281 1.16177 1.85206 1.21750 1.02844 0.99016 0.94221 1.22748 0.96428 1.00198 0.91921 1.23760 0.95888 1.02235 0.89969 1.66895 1.07422 1.44982 1.06916 1.23814 0.97585 0.97306 0.93921 0.89210 0.96683 0.95564 0.92582 0.78030 0.89098 0.89674 0.87283 0.91839 0.89104 0.87426 0.89553 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.75 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.77 5.30 -17.81 -0.09 1.68 16 7 N -0.88 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16 13 C 0.50 9.77 7.79 -10.99 -0.09 9.68 16 14 O -0.55 -13.15 15.41 5.56 0.09 -13.07 16 15 C -0.14 -1.87 5.55 -27.88 -0.15 -2.02 16 16 C -0.09 -1.27 3.34 -89.69 -0.30 -1.57 16 17 C 0.01 0.15 8.46 -2.77 -0.02 0.13 16 18 N -0.64 -7.52 8.53 -117.02 -1.00 -8.51 16 19 C 0.00 0.04 8.47 -2.76 -0.02 0.02 16 20 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 21 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.39 6.87 8.54 -40.82 -0.35 6.52 16 25 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 27 H 0.11 1.75 7.67 -51.93 -0.40 1.35 16 28 H 0.06 0.73 7.89 -51.93 -0.41 0.32 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.31 2.99 8.91 -39.30 -0.35 2.64 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 270.00 15.07 4.07 4.07 Total: -1.00 -30.75 270.00 -7.03 -37.78 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.70 Total: 6.89 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.81 Total: -3.34 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.65 Total: -47.95 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.75 -7.03 -37.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081766444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.357 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds