Wall clock time and date at job start Mon Mar 30 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46728 * 90.00208 * 8 6 4 10 10 H 1.48498 * 109.46997 * 209.99903 * 8 6 4 11 11 H 1.48494 * 109.47182 * 330.00149 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.34773 * 119.99910 * 84.99768 * 12 2 1 14 14 O 1.21277 * 120.00157 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99928 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47295 * 180.02562 * 15 13 12 17 17 C 1.53928 * 113.73340 * 271.72618 * 16 15 13 18 18 N 1.47958 * 86.18476 * 221.91992 * 17 16 15 19 19 C 1.47962 * 90.76184 * 24.68873 * 18 17 16 20 20 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 21 21 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 22 22 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 23 23 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 24 24 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 25 25 H 1.08999 * 109.47104 * 300.00397 * 15 13 12 26 26 H 1.09000 * 109.47712 * 60.00108 * 15 13 12 27 27 H 1.08999 * 112.93648 * 43.43412 * 16 15 13 28 28 H 1.09000 * 113.76530 * 336.24096 * 17 16 15 29 29 H 1.09005 * 113.75886 * 107.60401 * 17 16 15 30 30 H 1.00893 * 111.00466 * 137.58117 * 18 17 16 31 31 H 1.08993 * 113.76408 * 220.99467 * 19 18 17 32 32 H 1.09000 * 113.85900 * 89.63707 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.6306 -0.5439 4.4118 10 1 1.3446 -0.9489 5.1123 11 1 2.4881 -2.5652 3.7122 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8590 1.1584 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 2.7009 0.2543 -4.7588 17 6 1.3844 0.3441 -5.5514 18 7 2.2309 0.3571 -6.7648 19 6 3.3163 -0.3390 -6.0391 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7082 1.1609 3.4843 24 1 2.2490 -1.6319 -1.1526 25 1 3.6479 -1.1215 -3.3986 26 1 1.9759 -1.5508 -3.8326 27 1 3.1151 1.2236 -4.4815 28 1 0.7571 -0.5429 -5.4630 29 1 0.8362 1.2721 -5.3885 30 1 1.8408 -0.2329 -7.4843 31 1 4.3116 0.0430 -6.2657 32 1 3.2558 -1.4261 -6.0923 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081766444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:32 Heat of formation + Delta-G solvation = -42.988064 kcal Electronic energy + Delta-G solvation = -14064.367607 eV Core-core repulsion = 11638.357484 eV Total energy + Delta-G solvation = -2426.010122 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99291 -39.65977 -36.66941 -34.30317 -32.41725 -30.46474 -27.35022 -26.88751 -26.13565 -22.97464 -21.13913 -20.37906 -18.94647 -17.49995 -17.38181 -16.88779 -16.64109 -15.89334 -15.69359 -14.78622 -14.43624 -14.33469 -13.74184 -13.46223 -13.18283 -12.98827 -12.83707 -12.72001 -12.42795 -12.26194 -12.11953 -11.75953 -11.46935 -11.10532 -10.68674 -10.54283 -9.84707 -9.70694 -8.17314 -6.35213 1.45349 1.45943 1.56782 1.90297 2.36741 2.68431 3.13038 3.16418 3.58879 3.83231 4.06604 4.37157 4.47614 4.60709 4.63613 4.73555 4.83417 4.90456 4.92715 4.96771 5.10474 5.17656 5.35217 5.44956 5.63202 5.70842 5.92752 6.11111 6.40244 6.73813 7.02935 7.33457 7.63642 8.89080 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.073744 B = 0.006036 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.598471 B = 4637.611574 C = 4838.553624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.708 5.708 13 C 0.492 3.508 14 O -0.604 6.604 15 C -0.120 4.120 16 C -0.105 4.105 17 C 0.010 3.990 18 N -0.652 5.652 19 C 0.022 3.978 20 H 0.064 0.936 21 H 0.010 0.990 22 H 0.041 0.959 23 H 0.265 0.735 24 H 0.406 0.594 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.329 0.671 31 H 0.091 0.909 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 -8.727 -12.860 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.358 5.358 13 C 0.280 3.720 14 O -0.486 6.486 15 C -0.159 4.159 16 C -0.125 4.125 17 C -0.120 4.120 18 N -0.278 5.278 19 C -0.108 4.108 20 H 0.083 0.917 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.241 0.759 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.458 -6.979 -12.888 15.058 hybrid contribution -0.246 -1.035 1.253 1.644 sum 3.212 -8.014 -11.635 14.489 Atomic orbital electron populations 1.21884 0.98420 0.99423 0.99405 1.18311 0.91081 0.91820 0.82369 0.98830 1.21570 1.32501 1.13554 0.90812 0.90723 1.25846 0.94865 0.95602 1.02471 1.70065 1.37059 1.24094 1.24589 0.85314 0.77706 0.79227 0.77893 1.20406 1.21033 1.18196 1.46315 1.65367 1.14263 1.09808 1.21544 0.77333 0.87202 0.85890 1.90635 1.53154 1.18750 1.86047 1.21742 1.04783 0.98970 0.90454 1.22713 0.97428 0.99057 0.93283 1.23736 0.95838 1.01796 0.90674 1.66830 1.07648 1.46296 1.07041 1.23815 0.97225 0.98904 0.90868 0.91728 0.97041 0.93973 0.92594 0.75904 0.86189 0.86268 0.90864 0.89780 0.91939 0.85730 0.89035 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 14.02 2.56 44.25 0.11 14.13 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -28.91 8.73 25.60 0.22 -28.69 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.29 11.32 21.45 0.24 -53.04 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 9 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 12 N -0.71 -28.80 5.07 -446.11 -2.26 -31.06 16 13 C 0.49 19.04 7.79 87.66 0.68 19.72 16 14 O -0.60 -29.71 15.41 -3.02 -0.05 -29.76 16 15 C -0.12 -2.90 5.55 29.85 0.17 -2.73 16 16 C -0.11 -2.69 3.34 -10.15 -0.03 -2.73 16 17 C 0.01 0.24 8.46 86.40 0.73 0.97 16 18 N -0.65 -13.99 8.53 -524.14 -4.47 -18.46 16 19 C 0.02 0.39 8.47 86.41 0.73 1.12 16 20 H 0.06 3.64 6.07 -2.39 -0.01 3.62 16 21 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 22 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.41 13.45 8.54 -92.71 -0.79 12.66 16 25 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.12 2.17 7.84 -2.39 -0.02 2.15 16 27 H 0.07 2.41 7.67 -2.39 -0.02 2.39 16 28 H 0.08 1.70 7.89 -2.39 -0.02 1.69 16 29 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.33 5.34 8.91 -89.70 -0.80 4.54 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -69.33 270.00 -1.25 -70.58 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.47 Total: 21.08 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 3.73 Total: -3.23 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -6.49 Total: -102.57 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -69.33 -1.25 -70.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081766444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.592 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds