Wall clock time and date at job start Mon Mar 30 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48560 * 110.99785 * 2 1 4 4 C 1.54380 * 104.59273 * 200.96197 * 3 2 1 5 5 C 1.54261 * 105.06123 * 23.85586 * 4 3 2 6 6 C 1.48561 * 110.99813 * 244.58448 * 2 1 3 7 7 H 1.08999 * 110.41242 * 40.25879 * 6 2 1 8 8 C 1.53008 * 110.41030 * 277.93747 * 6 2 1 9 9 N 1.46499 * 109.47038 * 174.65850 * 8 6 2 10 10 C 1.34777 * 120.00055 * 180.95123 * 9 8 6 11 11 O 1.21685 * 119.99847 * 0.02562 * 10 9 8 12 12 C 1.46378 * 119.99955 * 179.97438 * 10 9 8 13 13 H 1.07997 * 119.99920 * 0.02562 * 12 10 9 14 14 C 1.40048 * 119.99737 * 180.02562 * 12 10 9 15 15 N 1.30671 * 119.99785 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 119.99813 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47170 * 60.00230 * 16 14 12 18 18 H 1.48504 * 109.47187 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47125 * 300.00062 * 16 14 12 20 20 H 1.09002 * 109.46875 * 180.71280 * 1 2 3 21 21 H 1.08999 * 109.47016 * 300.70808 * 1 2 3 22 22 H 1.08999 * 109.47190 * 60.71372 * 1 2 3 23 23 H 1.09000 * 110.41339 * 319.74248 * 3 2 1 24 24 H 1.08998 * 110.41045 * 82.18486 * 3 2 1 25 25 H 1.09002 * 110.32091 * 264.95842 * 4 3 2 26 26 H 1.08999 * 110.32604 * 142.74924 * 4 3 2 27 27 H 1.09007 * 110.32063 * 241.10550 * 5 4 3 28 28 H 1.08993 * 110.32253 * 118.89860 * 5 4 3 29 29 H 1.09003 * 109.46718 * 294.65406 * 8 6 2 30 30 H 1.08998 * 109.47023 * 54.65576 * 8 6 2 31 31 H 0.97005 * 119.99672 * 0.95572 * 9 8 6 32 32 H 0.97002 * 119.99371 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4432 1.2502 -0.5345 5 6 3.4432 -0.0538 -1.3586 6 6 2.0014 -0.5953 -1.2527 7 1 1.4098 -0.2712 -2.1089 8 6 2.0077 -2.1223 -1.1572 9 7 2.4146 -2.6904 -2.4448 10 6 2.4737 -4.0276 -2.6029 11 8 2.1888 -4.7630 -1.6762 12 6 2.8797 -4.5952 -3.8896 13 1 3.1321 -3.9425 -4.7122 14 6 2.9406 -5.9847 -4.0540 15 7 2.6346 -6.7743 -3.0588 16 14 3.4593 -6.7091 -5.6958 17 1 4.8310 -6.2479 -6.0291 18 1 3.4421 -8.1916 -5.6103 19 1 2.5167 -6.2637 -6.7533 20 1 -0.3633 -1.0276 0.0128 21 1 -0.3633 0.5248 0.8836 22 1 -0.3633 0.5027 -0.8963 23 1 1.4098 2.0212 -0.6601 24 1 2.0079 1.7916 1.0121 25 1 4.1483 1.1748 0.2934 26 1 3.6937 2.0996 -1.1700 27 1 4.1483 -0.7693 -0.9352 28 1 3.6936 0.1556 -2.3985 29 1 2.7096 -2.4351 -0.3841 30 1 1.0078 -2.4747 -0.9042 31 1 2.6414 -2.1042 -3.1836 32 1 2.6765 -7.7367 -3.1728 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082275123.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:15 Heat of formation + Delta-G solvation = -68.150438 kcal Electronic energy + Delta-G solvation = -14152.880968 eV Core-core repulsion = 11725.779723 eV Total energy + Delta-G solvation = -2427.101245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34895 -39.03508 -35.27667 -34.43903 -33.07725 -30.88967 -28.37648 -26.67378 -25.42693 -22.12804 -21.63915 -21.18198 -19.20421 -17.47843 -17.13377 -16.49555 -16.11983 -15.60743 -15.46320 -14.97558 -14.69734 -14.24455 -14.03404 -13.32206 -13.13271 -13.01309 -12.71533 -12.65294 -12.41640 -12.31019 -12.11366 -12.02337 -11.76415 -11.39452 -10.91714 -9.90036 -9.52039 -9.48743 -8.29183 -6.86482 1.40709 1.44741 1.56618 2.24788 2.47098 2.75015 3.46146 3.57776 3.67880 3.72474 4.02022 4.24128 4.27587 4.47923 4.50882 4.53307 4.72378 4.81813 4.91634 5.00260 5.01753 5.07171 5.22353 5.28606 5.31537 5.84385 5.87540 6.04028 6.23022 6.26724 6.86040 7.54562 8.48794 8.67317 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058672 B = 0.006428 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.112292 B = 4354.587809 C = 4606.085775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.531 5.531 3 C 0.034 3.966 4 C -0.118 4.118 5 C -0.120 4.120 6 C 0.064 3.936 7 H 0.062 0.938 8 C 0.156 3.844 9 N -0.751 5.751 10 C 0.536 3.464 11 O -0.635 6.635 12 C -0.573 4.573 13 H 0.090 0.910 14 C 0.026 3.974 15 N -0.824 5.824 16 Si 1.002 2.998 17 H -0.253 1.253 18 H -0.275 1.275 19 H -0.253 1.253 20 H 0.052 0.948 21 H 0.087 0.913 22 H 0.037 0.963 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.395 0.605 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 16.339 -0.101 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.256 5.256 3 C -0.094 4.094 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.044 4.044 7 H 0.080 0.920 8 C 0.031 3.969 9 N -0.406 5.406 10 C 0.340 3.660 11 O -0.523 6.523 12 C -0.610 4.610 13 H 0.108 0.892 14 C -0.188 4.188 15 N -0.454 5.454 16 Si 0.820 3.180 17 H -0.177 1.177 18 H -0.199 1.199 19 H -0.177 1.177 20 H 0.071 0.929 21 H 0.106 0.894 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.229 0.771 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.031 15.370 1.159 15.414 hybrid contribution -0.244 -0.103 -1.244 1.272 sum -0.214 15.267 -0.085 15.269 Atomic orbital electron populations 1.22538 0.87235 1.01863 1.01818 1.65144 1.09151 1.16794 1.34535 1.23201 0.95439 0.88520 1.02195 1.22305 0.96466 0.96960 0.99809 1.22358 0.94392 0.97661 1.01454 1.22713 0.97327 0.92331 0.92066 0.91999 1.20661 0.97368 0.92425 0.86434 1.45714 1.74553 1.06839 1.13511 1.18668 0.77393 0.80523 0.89385 1.90553 1.56230 1.60494 1.44977 1.21415 1.49213 0.93035 0.97339 0.89167 1.27039 0.92243 0.97307 1.02248 1.70201 1.36248 1.04810 1.34101 0.85022 0.79945 0.76925 0.76068 1.17672 1.19948 1.17725 0.92943 0.89393 0.94432 0.92554 0.88859 0.90805 0.89040 0.92645 0.89828 0.95333 0.95832 0.77124 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.41 127.69 1.20 1.54 16 2 N -0.53 -14.53 5.34 -882.66 -4.72 -19.25 16 3 C 0.03 0.67 6.49 86.45 0.56 1.23 16 4 C -0.12 -2.28 7.00 31.49 0.22 -2.06 16 5 C -0.12 -3.12 6.39 31.49 0.20 -2.92 16 6 C 0.06 1.96 2.31 45.06 0.10 2.06 16 7 H 0.06 1.78 7.89 -2.39 -0.02 1.76 16 8 C 0.16 6.63 5.27 86.38 0.46 7.09 16 9 N -0.75 -35.22 5.44 -467.39 -2.54 -37.76 16 10 C 0.54 32.29 7.75 86.36 0.67 32.96 16 11 O -0.64 -44.51 15.02 -4.30 -0.06 -44.57 16 12 C -0.57 -33.12 9.54 24.83 0.24 -32.88 16 13 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 14 C 0.03 1.50 5.50 85.30 0.47 1.97 16 15 N -0.82 -51.67 11.83 21.84 0.26 -51.41 16 16 Si 1.00 41.27 29.56 68.60 2.03 43.29 16 17 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 20 H 0.05 1.48 7.42 -2.39 -0.02 1.46 16 21 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.04 0.82 7.97 -2.39 -0.02 0.80 16 23 H 0.06 0.97 7.98 -2.39 -0.02 0.95 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.68 7.74 -2.38 -0.02 1.66 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 1.35 7.97 -2.39 -0.02 1.33 16 30 H 0.02 1.09 7.37 -2.39 -0.02 1.08 16 31 H 0.40 15.68 8.40 -92.70 -0.78 14.90 16 32 H 0.27 15.58 8.29 -92.71 -0.77 14.81 16 Total: -1.00 -77.20 267.77 -0.59 -77.79 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.32 Total: 22.92 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.12 Total: 9.00 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -7.00 Total: -108.43 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.06 Total: -44.57 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -77.20 -0.59 -77.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275123.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.643 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds