Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00146 * 2 1 4 4 C 1.46900 * 111.00086 * 123.95596 * 2 1 3 5 5 H 1.09005 * 110.88300 * 298.69358 * 4 2 1 6 6 C 1.55161 * 111.00848 * 62.57467 * 4 2 1 7 7 C 1.54319 * 102.94346 * 153.57978 * 6 4 2 8 8 N 1.47021 * 107.27048 * 337.80517 * 7 6 4 9 9 C 1.34780 * 125.65018 * 178.98956 * 8 7 6 10 10 O 1.21684 * 120.00348 * 179.97438 * 9 8 7 11 11 C 1.46384 * 119.99722 * 359.97438 * 9 8 7 12 12 H 1.08003 * 119.99960 * 359.97438 * 11 9 8 13 13 C 1.40045 * 119.99943 * 180.02562 * 11 9 8 14 14 N 1.30676 * 119.99791 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99905 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.46924 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46870 * 120.00118 * 15 13 11 18 18 H 1.48496 * 109.46987 * 239.99791 * 15 13 11 19 19 C 1.47422 * 108.70570 * 358.94733 * 8 7 6 20 20 H 1.08996 * 109.47212 * 296.04355 * 1 2 3 21 21 H 1.08993 * 109.46922 * 56.05043 * 1 2 3 22 22 H 1.09005 * 109.46747 * 176.04480 * 1 2 3 23 23 H 1.09001 * 109.47245 * 189.39236 * 3 2 1 24 24 H 1.09001 * 109.47012 * 309.39096 * 3 2 1 25 25 H 1.09001 * 109.47287 * 69.38813 * 3 2 1 26 26 H 1.09002 * 110.71495 * 271.94415 * 6 4 2 27 27 H 1.08997 * 110.72060 * 35.21106 * 6 4 2 28 28 H 1.08991 * 109.88565 * 97.22416 * 7 6 4 29 29 H 1.09001 * 109.88045 * 218.39560 * 7 6 4 30 30 H 0.96999 * 119.99393 * 179.97438 * 14 13 11 31 31 H 1.09011 * 110.36477 * 265.28621 * 19 8 7 32 32 H 1.09000 * 110.37200 * 142.96842 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6782 -0.3255 2.0828 6 6 1.5720 -2.2561 1.0485 7 6 2.6904 -2.9804 1.8269 8 7 3.8656 -2.0969 1.8258 9 6 5.0463 -2.3595 2.4203 10 8 5.9540 -1.5517 2.3540 11 6 5.2369 -3.6166 3.1458 12 1 4.4312 -4.3334 3.2050 13 6 6.4636 -3.8892 3.7640 14 7 7.4382 -3.0217 3.6927 15 14 6.7065 -5.4931 4.6904 16 1 5.4602 -6.2975 4.6225 17 1 7.8217 -6.2562 4.0748 18 1 7.0309 -5.2006 6.1096 19 6 3.5389 -0.8766 1.0659 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0722 1.3472 -0.1677 24 1 1.5168 1.9443 -0.7942 25 1 1.7880 1.8403 0.9619 26 1 0.6055 -2.4115 1.5279 27 1 1.5468 -2.5884 0.0107 28 1 2.3681 -3.1673 2.8511 29 1 2.9343 -3.9221 1.3351 30 1 8.2877 -3.2105 4.1212 31 1 3.8645 -0.9760 0.0303 32 1 4.0036 -0.0058 1.5285 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082275125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -28.052031 kcal Electronic energy + Delta-G solvation = -14407.004701 eV Core-core repulsion = 11981.642253 eV Total energy + Delta-G solvation = -2425.362447 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.92078 -36.72725 -34.69857 -32.47414 -29.84419 -28.70138 -27.10276 -26.10112 -23.53593 -21.94092 -19.89707 -19.05909 -16.74658 -16.06643 -15.52739 -14.72989 -14.47224 -14.30680 -13.73651 -13.38944 -12.88509 -12.76617 -12.26282 -11.94294 -11.80074 -11.60501 -11.32866 -11.05855 -10.90674 -10.82833 -10.45369 -10.42928 -10.31282 -10.10436 -8.85345 -8.28299 -7.62809 -7.15540 -6.19074 -4.63339 3.13572 3.21488 3.26284 3.91772 4.13910 4.56427 4.73347 4.89023 5.17305 5.25761 5.39640 5.42888 5.57095 5.62698 5.74773 5.81769 5.85365 5.98085 6.05802 6.11926 6.39728 6.49577 6.51922 6.69989 7.10709 7.18518 7.42625 7.45547 8.12471 8.43769 9.02923 9.51532 10.58761 10.77731 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061990 B = 0.007386 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.573844 B = 3789.898025 C = 4176.899431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.537 5.537 3 C 0.023 3.977 4 C 0.065 3.935 5 H 0.052 0.948 6 C -0.123 4.123 7 C 0.123 3.877 8 N -0.646 5.646 9 C 0.571 3.429 10 O -0.577 6.577 11 C -0.537 4.537 12 H 0.070 0.930 13 C 0.086 3.914 14 N -0.769 5.769 15 Si 0.909 3.091 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.127 3.873 20 H 0.022 0.978 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.268 0.732 31 H 0.055 0.945 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.542 2.377 -4.401 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.125 4.125 4 C -0.044 4.044 5 H 0.070 0.930 6 C -0.161 4.161 7 C -0.002 4.002 8 N -0.386 5.386 9 C 0.378 3.622 10 O -0.459 6.459 11 C -0.574 4.574 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.397 5.397 15 Si 0.733 3.267 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.201 1.201 19 C 0.002 3.998 20 H 0.041 0.959 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.589 2.629 -4.772 12.806 hybrid contribution -0.286 -0.377 1.196 1.286 sum -11.875 2.252 -3.576 12.605 Atomic orbital electron populations 1.22368 0.87687 1.02213 1.00023 1.61992 1.07483 1.13763 1.42924 1.22401 1.01564 0.88633 0.99939 1.22905 0.96384 0.93980 0.91094 0.93046 1.22702 0.98069 0.94021 1.01328 1.21562 0.85800 0.94026 0.98852 1.48669 1.13785 1.18133 1.58040 1.18055 0.78224 0.87879 0.78085 1.90605 1.40351 1.50461 1.64509 1.20931 0.99287 1.02552 1.34663 0.91179 1.25745 0.95305 0.97337 0.94965 1.70040 1.02659 1.33168 1.33873 0.86297 0.78982 0.82067 0.79330 1.18723 1.20108 1.20144 1.21713 0.91187 0.90474 0.96392 0.95946 0.91671 0.91232 0.90823 0.91707 0.95686 0.91412 0.90278 0.92897 0.92657 0.92125 0.92732 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.37 60.07 0.56 0.84 16 2 N -0.54 -7.45 4.92 -240.58 -1.18 -8.64 16 3 C 0.02 0.29 9.30 60.06 0.56 0.85 16 4 C 0.07 1.05 2.70 -65.56 -0.18 0.88 16 5 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.12 -1.85 5.40 -24.90 -0.13 -1.98 16 7 C 0.12 2.34 6.05 -3.07 -0.02 2.33 16 8 N -0.65 -15.53 3.33 -172.18 -0.57 -16.10 16 9 C 0.57 16.96 7.78 -12.98 -0.10 16.86 16 10 O -0.58 -19.38 15.28 5.20 0.08 -19.30 16 11 C -0.54 -15.54 9.06 -35.63 -0.32 -15.86 16 12 H 0.07 1.87 7.16 -52.48 -0.38 1.49 16 13 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 14 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 15 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 16 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.13 2.61 5.37 -2.53 -0.01 2.60 16 20 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 21 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 22 H 0.07 0.72 7.21 -51.93 -0.37 0.34 16 23 H 0.07 0.99 7.39 -51.93 -0.38 0.61 16 24 H 0.06 0.67 8.03 -51.93 -0.42 0.26 16 25 H 0.02 0.31 8.13 -51.93 -0.42 -0.12 16 26 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 31 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.06 1.33 8.02 -51.93 -0.42 0.91 16 LS Contribution 265.98 15.07 4.01 4.01 Total: -1.00 -34.46 265.98 -6.68 -41.14 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.90 Total: -2.53 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 0.26 Total: 8.85 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.10 Total: -47.49 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.30 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.46 -6.68 -41.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.088 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds