Wall clock time and date at job start Mon Mar 30 2020 02:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46981 * 2 1 4 4 C 1.50697 * 109.47159 * 120.00184 * 2 1 3 5 5 H 1.07994 * 120.00660 * 119.99869 * 4 2 1 6 6 C 1.37885 * 119.99568 * 300.00173 * 4 2 1 7 7 N 1.31506 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99710 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46870 * 60.00251 * 8 6 4 10 10 H 1.48503 * 109.47256 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47586 * 300.00437 * 8 6 4 12 12 N 1.46900 * 109.47278 * 240.00397 * 2 1 3 13 13 C 1.46900 * 110.99879 * 155.06852 * 12 2 1 14 14 H 1.08999 * 109.60008 * 33.91313 * 13 12 2 15 15 C 1.53346 * 109.60221 * 154.23595 * 13 12 2 16 16 C 1.53062 * 108.42514 * 187.44931 * 15 13 12 17 17 C 1.50175 * 109.89276 * 311.10054 * 16 15 13 18 18 O 1.21283 * 118.24753 * 197.58372 * 17 16 15 19 19 N 1.33351 * 123.50663 * 17.86290 * 17 16 15 20 20 C 1.45775 * 124.09406 * 357.20596 * 19 17 16 21 21 H 1.09003 * 109.47109 * 65.57636 * 1 2 3 22 22 H 1.09003 * 109.47012 * 185.56771 * 1 2 3 23 23 H 1.08993 * 109.47499 * 305.57094 * 1 2 3 24 24 H 0.97006 * 120.00159 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99769 * 279.02344 * 12 2 1 26 26 H 1.09004 * 109.67321 * 67.71708 * 15 13 12 27 27 H 1.09000 * 109.67744 * 307.18604 * 15 13 12 28 28 H 1.08999 * 109.40070 * 190.97494 * 16 15 13 29 29 H 1.09004 * 109.40014 * 71.23300 * 16 15 13 30 30 H 0.97009 * 117.94641 * 177.47017 * 19 17 16 31 31 H 1.09002 * 109.50992 * 259.17758 * 20 19 17 32 32 H 1.09001 * 108.98956 * 139.64936 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1203 4.0079 9 1 3.8063 -1.1208 4.0081 10 1 1.8268 -0.4199 5.2205 11 1 1.8259 -2.5203 4.0077 12 7 2.0197 -0.6924 -1.1995 13 6 3.3677 -0.2326 -1.5593 14 1 3.9268 0.0048 -0.6542 15 6 4.0957 -1.3337 -2.3397 16 6 5.5515 -0.9045 -2.5379 17 6 5.6028 0.5021 -3.0615 18 8 6.6318 0.8859 -3.5759 19 7 4.5791 1.3533 -2.9862 20 6 3.2702 1.0114 -2.4432 21 1 -0.3633 0.4249 -0.9357 22 1 -0.3633 -1.0228 0.0997 23 1 -0.3634 0.5978 0.8358 24 1 0.7086 1.1612 3.4844 25 1 2.0010 -1.6932 -1.0722 26 1 3.6186 -1.4724 -3.3100 27 1 4.0615 -2.2665 -1.7768 28 1 6.0324 -1.5740 -3.2511 29 1 6.0770 -0.9554 -1.5843 30 1 4.7128 2.2555 -3.3169 31 1 2.5758 0.8186 -3.2611 32 1 2.9033 1.8480 -1.8486 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082403721.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:37 Heat of formation + Delta-G solvation = -49.979536 kcal Electronic energy + Delta-G solvation = -14443.599824 eV Core-core repulsion = 12017.286528 eV Total energy + Delta-G solvation = -2426.313295 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99235 -37.08460 -34.78484 -32.97280 -31.82860 -29.27268 -26.53704 -25.11771 -24.10706 -21.81100 -20.08298 -18.71831 -17.11798 -16.65375 -15.68283 -15.44110 -14.85549 -14.14475 -13.92642 -13.69461 -13.19778 -13.09720 -12.39235 -12.01593 -11.70495 -11.33128 -11.19431 -10.97118 -10.79545 -10.71646 -10.30181 -10.09034 -9.84344 -9.54432 -9.22674 -8.82307 -8.48936 -7.48944 -6.09101 -4.21305 2.83476 3.22940 3.28788 3.30662 3.52874 4.32677 4.68880 4.92522 5.01384 5.16663 5.19217 5.55756 5.67742 5.79826 5.90271 5.99095 6.04335 6.29743 6.56828 6.79465 6.95025 7.04750 7.19794 7.37329 7.55216 7.66420 7.94650 8.04385 8.18233 8.39556 8.49422 8.89360 9.47086 10.92881 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.037411 B = 0.008204 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.253576 B = 3412.276957 C = 3708.309238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.207 3.793 3 H 0.033 0.967 4 C -0.549 4.549 5 H 0.053 0.947 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.684 5.684 13 C 0.077 3.923 14 H 0.060 0.940 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.521 3.479 18 O -0.575 6.575 19 N -0.715 5.715 20 C 0.118 3.882 21 H 0.014 0.986 22 H 0.026 0.974 23 H 0.078 0.922 24 H 0.263 0.737 25 H 0.336 0.664 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.396 0.604 31 H 0.071 0.929 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -2.024 -7.434 8.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.100 3.900 3 H 0.051 0.949 4 C -0.588 4.588 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.315 5.315 13 C -0.034 4.034 14 H 0.078 0.922 15 C -0.162 4.162 16 C -0.173 4.173 17 C 0.308 3.692 18 O -0.455 6.455 19 N -0.365 5.365 20 C -0.007 4.007 21 H 0.033 0.967 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.153 0.847 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.231 0.769 31 H 0.090 0.910 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.183 -1.506 -7.888 8.638 hybrid contribution 0.743 -0.523 1.685 1.914 sum 3.926 -2.029 -6.203 7.616 Atomic orbital electron populations 1.21680 0.97596 0.99799 0.99163 1.19214 0.92486 0.93996 0.84354 0.94939 1.21774 1.32242 1.12941 0.91888 0.92841 1.24925 0.94714 0.94812 0.98990 1.69873 1.36076 1.22629 1.23721 0.86704 0.79179 0.79898 0.82496 1.20357 1.21182 1.20229 1.60816 1.19820 1.10358 1.40463 1.21536 0.92082 0.93180 0.96617 0.92246 1.21879 0.93536 0.99293 1.01534 1.21605 0.99138 0.93093 1.03451 1.20215 0.82652 0.88277 0.78056 1.90714 1.30412 1.78246 1.46168 1.45506 1.13109 1.15061 1.62872 1.21484 0.82460 0.99020 0.97693 0.96665 0.95485 0.90312 0.92742 0.84664 0.90966 0.90617 0.88492 0.88280 0.76912 0.91028 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 9.21 37.16 0.34 -2.52 16 2 C 0.21 4.79 2.41 -68.86 -0.17 4.63 16 3 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 4 C -0.55 -14.05 8.27 -34.44 -0.28 -14.33 16 5 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.25 11.38 55.43 0.63 -23.62 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.68 -12.84 6.07 -100.81 -0.61 -13.45 16 13 C 0.08 1.27 2.35 -67.58 -0.16 1.11 16 14 H 0.06 1.15 7.61 -51.93 -0.40 0.75 16 15 C -0.12 -1.67 5.38 -26.52 -0.14 -1.81 16 16 C -0.13 -1.76 6.03 -28.10 -0.17 -1.93 16 17 C 0.52 8.19 7.71 -11.87 -0.09 8.10 16 18 O -0.57 -10.91 17.78 5.56 0.10 -10.81 16 19 N -0.71 -10.15 5.45 -61.38 -0.33 -10.49 16 20 C 0.12 1.75 6.65 -4.48 -0.03 1.72 16 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.08 2.00 6.24 -51.93 -0.32 1.67 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.34 6.19 7.95 -39.29 -0.31 5.88 16 26 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 27 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.40 5.05 8.80 -40.82 -0.36 4.69 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 LS Contribution 263.34 15.07 3.97 3.97 Total: -1.00 -28.60 263.34 -6.73 -35.32 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.66 Total: 6.90 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.79 Total: -3.31 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.32 Total: -47.56 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.10 Total: -10.81 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.60 -6.73 -35.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403721.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.655 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds