Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46981 * 2 1 4 4 C 1.50697 * 109.47159 * 120.00184 * 2 1 3 5 5 H 1.07994 * 120.00660 * 119.99869 * 4 2 1 6 6 C 1.37885 * 119.99568 * 300.00173 * 4 2 1 7 7 N 1.31506 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99710 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46870 * 60.00251 * 8 6 4 10 10 H 1.48503 * 109.47256 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47586 * 300.00437 * 8 6 4 12 12 N 1.46900 * 109.47278 * 240.00397 * 2 1 3 13 13 C 1.46900 * 110.99879 * 155.06852 * 12 2 1 14 14 H 1.08999 * 109.60008 * 33.91313 * 13 12 2 15 15 C 1.53346 * 109.60221 * 154.23595 * 13 12 2 16 16 C 1.53062 * 108.42514 * 187.44931 * 15 13 12 17 17 C 1.50175 * 109.89276 * 311.10054 * 16 15 13 18 18 O 1.21283 * 118.24753 * 197.58372 * 17 16 15 19 19 N 1.33351 * 123.50663 * 17.86290 * 17 16 15 20 20 C 1.45775 * 124.09406 * 357.20596 * 19 17 16 21 21 H 1.09003 * 109.47109 * 65.57636 * 1 2 3 22 22 H 1.09003 * 109.47012 * 185.56771 * 1 2 3 23 23 H 1.08993 * 109.47499 * 305.57094 * 1 2 3 24 24 H 0.97006 * 120.00159 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99769 * 279.02344 * 12 2 1 26 26 H 1.09004 * 109.67321 * 67.71708 * 15 13 12 27 27 H 1.09000 * 109.67744 * 307.18604 * 15 13 12 28 28 H 1.08999 * 109.40070 * 190.97494 * 16 15 13 29 29 H 1.09004 * 109.40014 * 71.23300 * 16 15 13 30 30 H 0.97009 * 117.94641 * 177.47017 * 19 17 16 31 31 H 1.09002 * 109.50992 * 259.17758 * 20 19 17 32 32 H 1.09001 * 108.98956 * 139.64936 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1203 4.0079 9 1 3.8063 -1.1208 4.0081 10 1 1.8268 -0.4199 5.2205 11 1 1.8259 -2.5203 4.0077 12 7 2.0197 -0.6924 -1.1995 13 6 3.3677 -0.2326 -1.5593 14 1 3.9268 0.0048 -0.6542 15 6 4.0957 -1.3337 -2.3397 16 6 5.5515 -0.9045 -2.5379 17 6 5.6028 0.5021 -3.0615 18 8 6.6318 0.8859 -3.5759 19 7 4.5791 1.3533 -2.9862 20 6 3.2702 1.0114 -2.4432 21 1 -0.3633 0.4249 -0.9357 22 1 -0.3633 -1.0228 0.0997 23 1 -0.3634 0.5978 0.8358 24 1 0.7086 1.1612 3.4844 25 1 2.0010 -1.6932 -1.0722 26 1 3.6186 -1.4724 -3.3100 27 1 4.0615 -2.2665 -1.7768 28 1 6.0324 -1.5740 -3.2511 29 1 6.0770 -0.9554 -1.5843 30 1 4.7128 2.2555 -3.3169 31 1 2.5758 0.8186 -3.2611 32 1 2.9033 1.8480 -1.8486 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082403721.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = -71.108096 kcal Electronic energy + Delta-G solvation = -14444.516027 eV Core-core repulsion = 12017.286528 eV Total energy + Delta-G solvation = -2427.229499 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24726 -38.54289 -36.38862 -34.44958 -33.36668 -30.85584 -28.01258 -27.10825 -25.30203 -23.11059 -21.88960 -19.95511 -18.69350 -18.22919 -17.05795 -16.81884 -16.58033 -15.57414 -15.34780 -15.06051 -14.71356 -14.32237 -14.11610 -13.48854 -13.24088 -13.01022 -12.81899 -12.68891 -12.28378 -12.26029 -12.02137 -11.85139 -11.38791 -11.11026 -10.81052 -10.49721 -10.07760 -9.13750 -8.07113 -6.26851 1.40496 1.41870 1.48214 1.59944 2.34243 2.40872 3.15972 3.39827 3.73204 3.85321 3.97650 4.34205 4.47803 4.55429 4.73005 4.86116 4.90589 4.92485 5.14294 5.19439 5.26134 5.37178 5.52206 5.70169 5.79497 6.08760 6.17378 6.27560 6.39615 6.80304 7.01440 7.18191 7.45032 8.91495 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.037411 B = 0.008204 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.253576 B = 3412.276957 C = 3708.309238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.213 3.787 3 H 0.006 0.994 4 C -0.558 4.558 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.672 5.672 13 C 0.075 3.925 14 H 0.029 0.971 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.516 3.484 18 O -0.610 6.610 19 N -0.707 5.707 20 C 0.127 3.873 21 H 0.033 0.967 22 H 0.025 0.975 23 H 0.051 0.949 24 H 0.261 0.739 25 H 0.341 0.659 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.403 0.597 31 H 0.087 0.913 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -3.246 -8.053 9.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 H 0.024 0.976 4 C -0.597 4.597 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.773 3.227 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.303 5.303 13 C -0.036 4.036 14 H 0.047 0.953 15 C -0.151 4.151 16 C -0.167 4.167 17 C 0.304 3.696 18 O -0.494 6.494 19 N -0.357 5.357 20 C 0.002 3.998 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.159 0.841 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.137 0.863 29 H 0.120 0.880 30 H 0.239 0.761 31 H 0.105 0.895 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.510 -2.734 -8.517 9.609 hybrid contribution 0.632 -0.114 1.849 1.958 sum 4.142 -2.848 -6.667 8.350 Atomic orbital electron populations 1.21525 0.97538 0.99272 0.98972 1.18985 0.92512 0.92768 0.85325 0.97597 1.22134 1.31766 1.12880 0.92903 0.92688 1.25642 0.95114 0.95537 1.01737 1.69999 1.37229 1.23876 1.24075 0.85790 0.78591 0.79005 0.79308 1.20106 1.21292 1.19567 1.60707 1.21288 1.10339 1.37920 1.21567 0.90734 0.95130 0.96201 0.95289 1.21800 0.93184 0.98294 1.01804 1.21622 0.99179 0.91838 1.04073 1.20674 0.82158 0.89244 0.77489 1.90702 1.31656 1.79081 1.47935 1.45452 1.12694 1.15420 1.62101 1.21356 0.82817 0.97915 0.97725 0.94823 0.95537 0.92994 0.92952 0.84137 0.89426 0.89535 0.86262 0.87988 0.76123 0.89491 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.23 9.21 71.98 0.66 -4.57 16 2 C 0.21 9.78 2.41 44.17 0.11 9.89 16 3 H 0.01 0.31 7.33 -2.39 -0.02 0.29 16 4 C -0.56 -28.28 8.27 25.60 0.21 -28.06 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -50.50 11.38 21.45 0.24 -50.25 16 8 Si 0.95 41.80 29.54 68.60 2.03 43.82 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 N -0.67 -24.23 6.07 -472.85 -2.87 -27.10 16 13 C 0.07 2.36 2.35 45.00 0.11 2.46 16 14 H 0.03 1.11 7.61 -2.39 -0.02 1.09 16 15 C -0.11 -2.71 5.38 30.73 0.17 -2.55 16 16 C -0.13 -3.05 6.03 29.70 0.18 -2.87 16 17 C 0.52 15.41 7.71 87.71 0.68 16.08 16 18 O -0.61 -22.52 17.78 -3.04 -0.05 -22.57 16 19 N -0.71 -19.10 5.45 -467.27 -2.55 -21.65 16 20 C 0.13 3.56 6.65 86.49 0.58 4.14 16 21 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 2.65 6.24 -2.39 -0.01 2.63 16 24 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 25 H 0.34 11.85 7.95 -89.69 -0.71 11.14 16 26 H 0.09 1.89 8.13 -2.38 -0.02 1.87 16 27 H 0.09 1.94 7.99 -2.39 -0.02 1.92 16 28 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.40 9.84 8.80 -92.70 -0.82 9.02 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.07 2.01 7.68 -2.39 -0.02 1.99 16 Total: -1.00 -60.08 263.34 -0.47 -60.55 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.41 Total: 21.19 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 3.13 Total: -3.98 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -5.17 Total: -99.01 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -60.08 -0.47 -60.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403721.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.561 kcal (2) G-P(sol) polarization free energy of solvation -60.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds