Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 C 1.50696 * 109.47526 * 239.99324 * 2 1 3 5 5 H 1.07999 * 120.00895 * 239.99815 * 4 2 1 6 6 C 1.37885 * 119.99580 * 60.00081 * 4 2 1 7 7 N 1.31510 * 120.00045 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99682 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47116 * 60.00370 * 8 6 4 10 10 H 1.48506 * 109.46712 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47590 * 299.99834 * 8 6 4 12 12 N 1.46911 * 109.47141 * 119.99544 * 2 1 3 13 13 C 1.46896 * 110.99664 * 275.00361 * 12 2 1 14 14 H 1.08992 * 109.60875 * 35.32007 * 13 12 2 15 15 C 1.53347 * 109.73803 * 155.73184 * 13 12 2 16 16 C 1.52879 * 108.58835 * 187.17786 * 15 13 12 17 17 C 1.50174 * 109.99069 * 311.48436 * 16 15 13 18 18 O 1.21283 * 118.25021 * 197.39652 * 17 16 15 19 19 N 1.33350 * 123.50638 * 17.11174 * 17 16 15 20 20 C 1.45761 * 124.10804 * 358.03930 * 19 17 16 21 21 H 1.09009 * 109.47183 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47275 * 300.00283 * 1 2 3 23 23 H 1.08995 * 109.47422 * 60.00573 * 1 2 3 24 24 H 0.96998 * 120.00270 * 180.02562 * 7 6 4 25 25 H 1.00903 * 110.99696 * 151.04899 * 12 2 1 26 26 H 1.09001 * 109.67180 * 307.10382 * 15 13 12 27 27 H 1.09007 * 109.67237 * 67.59447 * 15 13 12 28 28 H 1.09003 * 109.50709 * 191.22915 * 16 15 13 29 29 H 1.08998 * 109.19902 * 71.55208 * 16 15 13 30 30 H 0.97001 * 117.94701 * 178.05410 * 19 17 16 31 31 H 1.08997 * 109.29941 * 139.40896 * 20 19 17 32 32 H 1.09004 * 109.29959 * 258.99223 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0079 10 1 1.8270 -0.4202 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0196 -0.6924 1.1996 13 6 2.0823 0.2227 2.3469 14 1 1.2550 0.9305 2.2958 15 6 1.9955 -0.5768 3.6525 16 6 1.8819 0.4051 4.8187 17 6 2.9299 1.4735 4.6942 18 8 3.1936 2.1360 5.6752 19 7 3.5899 1.7291 3.5640 20 6 3.4094 0.9824 2.3253 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 0.7089 1.1612 -3.4844 25 1 2.9173 -1.1204 1.0289 26 1 1.1185 -1.2238 3.6290 27 1 2.8944 -1.1815 3.7730 28 1 2.0192 -0.1289 5.7590 29 1 0.8934 0.8643 4.8057 30 1 4.2306 2.4574 3.5665 31 1 3.4146 1.6746 1.4834 32 1 4.2268 0.2704 2.2114 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082403722.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = -69.995374 kcal Electronic energy + Delta-G solvation = -14372.695894 eV Core-core repulsion = 11945.514647 eV Total energy + Delta-G solvation = -2427.181247 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.29323 -38.63150 -36.36092 -34.44384 -33.42130 -30.84737 -27.97604 -27.16673 -25.35936 -23.25650 -21.69801 -20.32569 -18.43377 -18.17815 -17.08554 -16.87584 -16.49395 -15.72619 -15.32373 -15.12567 -14.70980 -14.40208 -14.25182 -13.44461 -13.22713 -12.81603 -12.68666 -12.59518 -12.51738 -12.16990 -12.12494 -11.91639 -11.52521 -10.86861 -10.83274 -10.54702 -10.13679 -9.07395 -8.10872 -6.24305 1.45679 1.47226 1.54123 1.58585 2.31438 2.44025 3.18573 3.41355 3.76131 3.76675 3.92975 4.20581 4.43953 4.49632 4.66480 4.78139 4.86376 4.94633 5.12252 5.22523 5.25962 5.28503 5.53273 5.70043 5.75754 5.89345 6.25687 6.28449 6.48939 6.78597 7.03051 7.16130 7.46451 8.94230 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058577 B = 0.006848 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.890520 B = 4087.831433 C = 4183.528381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.216 3.784 3 H -0.021 1.021 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.270 1.270 12 N -0.670 5.670 13 C 0.073 3.927 14 H 0.065 0.935 15 C -0.101 4.101 16 C -0.127 4.127 17 C 0.516 3.484 18 O -0.610 6.610 19 N -0.706 5.706 20 C 0.088 3.912 21 H 0.028 0.972 22 H 0.022 0.978 23 H 0.054 0.946 24 H 0.261 0.739 25 H 0.339 0.661 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.400 0.600 31 H 0.066 0.934 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 -2.156 8.591 9.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H -0.004 1.004 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.300 5.300 13 C -0.038 4.038 14 H 0.083 0.917 15 C -0.139 4.139 16 C -0.167 4.167 17 C 0.305 3.695 18 O -0.493 6.493 19 N -0.356 5.356 20 C -0.038 4.038 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.158 0.842 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.417 -2.165 9.074 9.637 hybrid contribution 1.170 0.770 -1.468 2.029 sum 3.587 -1.395 7.606 8.524 Atomic orbital electron populations 1.21585 0.98076 0.98927 0.98959 1.18921 0.92463 0.91183 0.86653 1.00382 1.21585 1.31602 1.12753 0.91502 0.91907 1.25677 0.95216 0.95612 1.01952 1.70008 1.37500 1.24073 1.24140 0.85615 0.78781 0.78662 0.78573 1.19774 1.21434 1.19510 1.60760 1.32482 1.31778 1.04995 1.21870 0.95087 0.93930 0.92937 0.91660 1.21558 1.04357 0.97283 0.90688 1.21616 0.98032 0.95262 1.01768 1.20757 0.82334 0.84728 0.81663 1.90709 1.68154 1.52989 1.37424 1.45436 1.42930 1.36340 1.10931 1.22259 0.99784 0.96448 0.85305 0.95260 0.95922 0.92733 0.92960 0.84226 0.89213 0.90522 0.86355 0.87397 0.76454 0.91516 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 9.17 71.98 0.66 -4.83 16 2 C 0.22 10.01 2.42 44.16 0.11 10.12 16 3 H -0.02 -1.09 7.21 -2.39 -0.02 -1.10 16 4 C -0.54 -27.35 8.59 25.60 0.22 -27.13 16 5 H 0.06 3.10 7.62 -2.91 -0.02 3.08 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -50.85 11.32 21.45 0.24 -50.60 16 8 Si 0.96 41.54 29.54 68.60 2.03 43.57 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.67 -24.31 6.07 -472.85 -2.87 -27.18 16 13 C 0.07 2.17 2.34 45.01 0.11 2.27 16 14 H 0.07 2.17 7.11 -2.39 -0.02 2.15 16 15 C -0.10 -2.34 5.64 30.67 0.17 -2.17 16 16 C -0.13 -2.82 6.03 29.64 0.18 -2.64 16 17 C 0.52 14.67 7.72 87.71 0.68 15.35 16 18 O -0.61 -21.76 17.78 -3.04 -0.05 -21.81 16 19 N -0.71 -18.33 5.45 -467.30 -2.55 -20.87 16 20 C 0.09 2.37 6.46 86.49 0.56 2.93 16 21 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.02 0.93 7.43 -2.39 -0.02 0.91 16 23 H 0.05 2.86 6.07 -2.39 -0.01 2.84 16 24 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 25 H 0.34 11.74 7.84 -89.69 -0.70 11.04 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.08 1.63 8.13 -2.38 -0.02 1.62 16 28 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.40 9.56 8.80 -92.71 -0.82 8.74 16 31 H 0.07 2.00 7.57 -2.39 -0.02 1.98 16 32 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 Total: -1.00 -60.43 261.74 -0.46 -60.90 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.39 Total: 20.88 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 3.13 Total: -4.87 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -5.17 Total: -98.66 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -60.43 -0.46 -60.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403722.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.100 kcal (2) G-P(sol) polarization free energy of solvation -60.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds