Wall clock time and date at job start Mon Mar 30 2020 02:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46492 * 2 1 4 4 C 1.50702 * 109.47144 * 119.99711 * 2 1 3 5 5 H 1.07997 * 119.99419 * 94.00298 * 4 2 1 6 6 C 1.37870 * 120.00112 * 274.00253 * 4 2 1 7 7 N 1.31520 * 120.00252 * 355.28330 * 6 4 2 8 8 Si 1.86799 * 119.99944 * 175.28202 * 6 4 2 9 9 H 1.48502 * 109.47156 * 59.99809 * 8 6 4 10 10 H 1.48501 * 109.47236 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47297 * 300.00056 * 8 6 4 12 12 N 1.46898 * 109.47182 * 240.00186 * 2 1 3 13 13 C 1.47188 * 110.99917 * 207.46070 * 12 2 1 14 14 C 1.52990 * 108.72813 * 305.62774 * 13 12 2 15 15 N 1.46003 * 110.04248 * 309.71297 * 14 13 12 16 16 C 1.33717 * 122.93183 * 18.15722 * 15 14 13 17 17 O 1.21276 * 118.62677 * 178.31379 * 16 15 14 18 18 C 1.46900 * 110.99984 * 84.56977 * 12 2 1 19 19 H 1.08999 * 109.38766 * 193.22765 * 18 12 2 20 20 C 1.53004 * 109.38753 * 312.90774 * 18 12 2 21 21 H 1.08997 * 109.47578 * 61.68863 * 1 2 3 22 22 H 1.08999 * 109.46999 * 181.69415 * 1 2 3 23 23 H 1.09003 * 109.46786 * 301.68867 * 1 2 3 24 24 H 0.96992 * 119.99842 * 5.29049 * 7 6 4 25 25 H 1.08998 * 109.59595 * 65.40558 * 13 12 2 26 26 H 1.09000 * 109.59409 * 185.70854 * 13 12 2 27 27 H 1.09001 * 109.37220 * 69.88532 * 14 13 12 28 28 H 1.09004 * 109.37154 * 189.53099 * 14 13 12 29 29 H 0.97006 * 118.53379 * 198.13762 * 15 14 13 30 30 H 1.09009 * 109.46645 * 62.13295 * 20 18 12 31 31 H 1.08991 * 109.47527 * 182.12823 * 20 18 12 32 32 H 1.08993 * 109.47478 * 302.13955 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.2739 -1.7620 1.1860 6 6 2.1836 -0.0177 2.4129 7 7 1.9788 1.2811 2.4451 8 14 2.6793 -0.9238 3.9694 9 1 3.9979 -1.5754 3.7641 10 1 2.7729 0.0403 5.0950 11 1 1.6608 -1.9569 4.2865 12 7 2.0197 -0.6924 -1.1994 13 6 3.3451 -1.2866 -0.9613 14 6 4.2898 -0.1941 -0.4569 15 7 4.2260 0.9685 -1.3379 16 6 3.2181 1.1797 -2.1909 17 8 3.2288 2.1880 -2.8647 18 6 2.0728 0.2202 -2.3493 19 1 2.2086 -0.3574 -3.2637 20 6 0.7618 1.0041 -2.4366 21 1 -0.3634 0.4874 -0.9047 22 1 -0.3633 -1.0272 0.0304 23 1 -0.3633 0.5399 0.8745 24 1 1.6475 1.7394 1.6571 25 1 3.2634 -2.0739 -0.2119 26 1 3.7303 -1.7054 -1.8910 27 1 3.9973 0.0997 0.5512 28 1 5.3097 -0.5783 -0.4383 29 1 4.9468 1.6167 -1.3027 30 1 0.6394 1.6085 -1.5377 31 1 0.7846 1.6542 -3.3111 32 1 -0.0727 0.3083 -2.5227 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082475401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:42 Heat of formation + Delta-G solvation = -17.017087 kcal Electronic energy + Delta-G solvation = -15473.124419 eV Core-core repulsion = 13048.240483 eV Total energy + Delta-G solvation = -2424.883936 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27938 -37.07318 -34.49789 -33.14595 -30.63844 -29.54367 -27.07016 -24.63878 -23.25323 -22.33039 -20.92625 -18.38789 -16.76512 -16.42351 -16.01335 -15.12826 -14.70576 -14.23399 -13.79094 -13.51257 -13.05180 -12.37592 -12.07338 -11.84180 -11.46735 -11.35081 -11.26176 -11.02750 -10.63211 -10.53881 -10.24237 -10.19025 -9.87122 -9.61194 -8.68455 -8.49480 -8.29558 -7.39321 -6.47403 -4.20205 3.12250 3.33134 3.37375 3.54618 3.78349 4.39020 4.73970 5.10076 5.25777 5.46772 5.64470 5.67840 5.80431 5.89741 6.19692 6.28442 6.42207 6.55784 6.56882 6.75260 6.81495 6.89451 7.03410 7.21028 7.40572 7.61214 7.80608 7.82641 8.25430 8.40082 8.69238 8.73104 9.49738 10.88458 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.012719 C = 0.011523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.080322 B = 2200.873438 C = 2429.441372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.186 3.814 3 H 0.016 0.984 4 C -0.596 4.596 5 H 0.060 0.940 6 C 0.022 3.978 7 N -0.905 5.905 8 Si 1.065 2.935 9 H -0.287 1.287 10 H -0.283 1.283 11 H -0.287 1.287 12 N -0.520 5.520 13 C 0.060 3.940 14 C 0.066 3.934 15 N -0.714 5.714 16 C 0.493 3.507 17 O -0.574 6.574 18 C 0.068 3.932 19 H 0.099 0.901 20 C -0.136 4.136 21 H 0.045 0.955 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.270 0.730 25 H 0.103 0.897 26 H 0.053 0.947 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.390 0.610 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -4.378 -4.986 6.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.080 3.920 3 H 0.033 0.967 4 C -0.635 4.635 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.541 5.541 8 Si 0.893 3.107 9 H -0.214 1.214 10 H -0.209 1.209 11 H -0.213 1.213 12 N -0.245 5.245 13 C -0.068 4.068 14 C -0.059 4.059 15 N -0.364 5.364 16 C 0.278 3.722 17 O -0.453 6.453 18 C -0.044 4.044 19 H 0.117 0.883 20 C -0.194 4.194 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.224 0.776 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.083 -4.188 -3.834 6.048 hybrid contribution 0.551 0.586 -1.235 1.474 sum 2.634 -3.603 -5.069 6.754 Atomic orbital electron populations 1.22374 0.98154 1.00485 0.99544 1.19564 0.92091 0.93413 0.86902 0.96671 1.21977 1.48691 0.97789 0.95007 0.92167 1.25783 0.95067 0.95987 1.01488 1.70804 1.41601 1.08195 1.33483 0.83594 0.76375 0.75060 0.75702 1.21357 1.20882 1.21294 1.62804 1.23669 1.32104 1.05916 1.22221 0.87599 0.96929 1.00062 1.22481 0.99766 0.86671 0.96949 1.45620 1.24078 1.26531 1.40184 1.21385 0.84366 0.87610 0.78791 1.90643 1.78847 1.29240 1.46619 1.21864 0.93141 0.92081 0.97344 0.88339 1.22060 0.95156 0.99630 1.02516 0.93686 0.93750 0.93952 0.91823 0.87887 0.92861 0.87199 0.92281 0.77614 0.91303 0.92190 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.75 37.16 0.33 -2.92 16 2 C 0.19 4.29 0.73 -68.86 -0.05 4.24 16 3 H 0.02 0.40 4.89 -51.93 -0.25 0.15 16 4 C -0.60 -14.65 5.40 -34.44 -0.19 -14.84 16 5 H 0.06 1.47 6.14 -52.49 -0.32 1.15 16 6 C 0.02 0.58 5.05 -17.82 -0.09 0.49 16 7 N -0.91 -25.47 13.62 55.43 0.76 -24.72 16 8 Si 1.06 23.19 29.91 -169.99 -5.08 18.11 16 9 H -0.29 -5.88 7.11 56.52 0.40 -5.47 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.52 -10.45 4.82 -221.51 -1.07 -11.52 16 13 C 0.06 1.10 5.47 -3.67 -0.02 1.08 16 14 C 0.07 1.21 6.49 -4.32 -0.03 1.18 16 15 N -0.71 -13.51 5.44 -61.07 -0.33 -13.84 16 16 C 0.49 10.14 6.46 -11.68 -0.08 10.07 16 17 O -0.57 -13.18 17.10 5.56 0.10 -13.09 16 18 C 0.07 1.28 3.00 -69.08 -0.21 1.08 16 19 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 20 C -0.14 -2.46 7.09 37.16 0.26 -2.19 16 21 H 0.04 0.88 3.80 -51.93 -0.20 0.68 16 22 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.27 7.76 6.64 -40.82 -0.27 7.49 16 25 H 0.10 1.92 6.14 -51.93 -0.32 1.60 16 26 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 27 H 0.11 2.43 5.51 -51.93 -0.29 2.14 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.39 6.79 8.84 -40.82 -0.36 6.43 16 30 H 0.07 1.38 5.53 -51.92 -0.29 1.09 16 31 H 0.06 1.02 7.87 -51.93 -0.41 0.61 16 32 H 0.07 1.23 6.96 -51.93 -0.36 0.86 16 LS Contribution 243.62 15.07 3.67 3.67 Total: -1.00 -28.85 243.62 -6.00 -34.85 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -3.97 Total: 8.36 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.82 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.64 Total: -50.08 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.10 Total: -13.09 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.08 Total: 18.11 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.85 -6.00 -34.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082475401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.834 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds