Wall clock time and date at job start Mon Mar 30 2020 02:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46492 * 2 1 4 4 C 1.50702 * 109.47144 * 119.99711 * 2 1 3 5 5 H 1.07997 * 119.99419 * 94.00298 * 4 2 1 6 6 C 1.37870 * 120.00112 * 274.00253 * 4 2 1 7 7 N 1.31520 * 120.00252 * 355.28330 * 6 4 2 8 8 Si 1.86799 * 119.99944 * 175.28202 * 6 4 2 9 9 H 1.48502 * 109.47156 * 59.99809 * 8 6 4 10 10 H 1.48501 * 109.47236 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47297 * 300.00056 * 8 6 4 12 12 N 1.46898 * 109.47182 * 240.00186 * 2 1 3 13 13 C 1.47188 * 110.99917 * 207.46070 * 12 2 1 14 14 C 1.52990 * 108.72813 * 305.62774 * 13 12 2 15 15 N 1.46003 * 110.04248 * 309.71297 * 14 13 12 16 16 C 1.33717 * 122.93183 * 18.15722 * 15 14 13 17 17 O 1.21276 * 118.62677 * 178.31379 * 16 15 14 18 18 C 1.46900 * 110.99984 * 84.56977 * 12 2 1 19 19 H 1.08999 * 109.38766 * 193.22765 * 18 12 2 20 20 C 1.53004 * 109.38753 * 312.90774 * 18 12 2 21 21 H 1.08997 * 109.47578 * 61.68863 * 1 2 3 22 22 H 1.08999 * 109.46999 * 181.69415 * 1 2 3 23 23 H 1.09003 * 109.46786 * 301.68867 * 1 2 3 24 24 H 0.96992 * 119.99842 * 5.29049 * 7 6 4 25 25 H 1.08998 * 109.59595 * 65.40558 * 13 12 2 26 26 H 1.09000 * 109.59409 * 185.70854 * 13 12 2 27 27 H 1.09001 * 109.37220 * 69.88532 * 14 13 12 28 28 H 1.09004 * 109.37154 * 189.53099 * 14 13 12 29 29 H 0.97006 * 118.53379 * 198.13762 * 15 14 13 30 30 H 1.09009 * 109.46645 * 62.13295 * 20 18 12 31 31 H 1.08991 * 109.47527 * 182.12823 * 20 18 12 32 32 H 1.08993 * 109.47478 * 302.13955 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.2739 -1.7620 1.1860 6 6 2.1836 -0.0177 2.4129 7 7 1.9788 1.2811 2.4451 8 14 2.6793 -0.9238 3.9694 9 1 3.9979 -1.5754 3.7641 10 1 2.7729 0.0403 5.0950 11 1 1.6608 -1.9569 4.2865 12 7 2.0197 -0.6924 -1.1994 13 6 3.3451 -1.2866 -0.9613 14 6 4.2898 -0.1941 -0.4569 15 7 4.2260 0.9685 -1.3379 16 6 3.2181 1.1797 -2.1909 17 8 3.2288 2.1880 -2.8647 18 6 2.0728 0.2202 -2.3493 19 1 2.2086 -0.3574 -3.2637 20 6 0.7618 1.0041 -2.4366 21 1 -0.3634 0.4874 -0.9047 22 1 -0.3633 -1.0272 0.0304 23 1 -0.3633 0.5399 0.8745 24 1 1.6475 1.7394 1.6571 25 1 3.2634 -2.0739 -0.2119 26 1 3.7303 -1.7054 -1.8910 27 1 3.9973 0.0997 0.5512 28 1 5.3097 -0.5783 -0.4383 29 1 4.9468 1.6167 -1.3027 30 1 0.6394 1.6085 -1.5377 31 1 0.7846 1.6542 -3.3111 32 1 -0.0727 0.3083 -2.5227 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082475401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:42 Heat of formation + Delta-G solvation = -39.316180 kcal Electronic energy + Delta-G solvation = -15474.091380 eV Core-core repulsion = 13048.240483 eV Total energy + Delta-G solvation = -2425.850898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.87376 -38.75974 -36.09989 -34.98238 -32.20373 -31.33736 -28.59636 -26.58448 -24.86160 -23.84879 -22.68939 -20.04546 -18.38127 -18.20574 -17.60460 -16.80565 -16.33331 -15.90044 -15.52415 -15.14534 -14.59491 -13.97229 -13.81171 -13.46185 -13.12673 -13.00685 -12.88198 -12.72956 -12.29922 -12.16868 -11.95375 -11.84683 -11.52979 -11.30500 -10.54273 -10.33058 -9.98496 -9.04227 -8.51880 -6.23259 1.51800 1.58885 1.65112 1.82367 2.27232 2.60254 3.13645 3.32304 3.58035 3.98220 4.18236 4.22000 4.36151 4.48129 4.69479 4.75843 4.79884 4.92693 4.94834 5.10042 5.14606 5.24441 5.35616 5.61457 5.67710 5.88602 5.99074 6.24804 6.42936 6.51117 6.71143 7.12975 7.54406 8.83898 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.036829 B = 0.012719 C = 0.011523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.080322 B = 2200.873438 C = 2429.441372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.192 3.808 3 H -0.017 1.017 4 C -0.584 4.584 5 H 0.065 0.935 6 C -0.023 4.023 7 N -0.940 5.940 8 Si 1.106 2.894 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.275 1.275 12 N -0.518 5.518 13 C 0.057 3.943 14 C 0.070 3.930 15 N -0.710 5.710 16 C 0.486 3.514 17 O -0.604 6.604 18 C 0.067 3.933 19 H 0.129 0.871 20 C -0.132 4.132 21 H 0.068 0.932 22 H 0.046 0.954 23 H 0.015 0.985 24 H 0.253 0.747 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.395 0.605 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 -6.264 -5.799 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.085 3.915 3 H 0.001 0.999 4 C -0.623 4.623 5 H 0.084 0.916 6 C -0.222 4.222 7 N -0.577 5.577 8 Si 0.929 3.071 9 H -0.187 1.187 10 H -0.224 1.224 11 H -0.201 1.201 12 N -0.243 5.243 13 C -0.071 4.071 14 C -0.055 4.055 15 N -0.359 5.359 16 C 0.272 3.728 17 O -0.486 6.486 18 C -0.045 4.045 19 H 0.146 0.854 20 C -0.189 4.189 21 H 0.087 0.913 22 H 0.065 0.935 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.230 0.770 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.678 -6.113 -4.658 8.138 hybrid contribution 0.388 1.159 -1.039 1.604 sum 3.066 -4.954 -5.696 8.148 Atomic orbital electron populations 1.22298 0.97632 1.00413 0.99566 1.19369 0.92492 0.91766 0.87858 0.99927 1.22207 1.46864 0.97835 0.95358 0.91649 1.26949 0.94966 0.95775 1.04539 1.70932 1.44437 1.09574 1.32802 0.83061 0.77584 0.74165 0.72295 1.18733 1.22438 1.20070 1.62769 1.24992 1.31576 1.04920 1.22353 0.86588 0.96517 1.01673 1.22394 1.02000 0.86409 0.94669 1.45639 1.23881 1.26871 1.39525 1.21764 0.84835 0.87558 0.78633 1.90627 1.79492 1.30440 1.48039 1.22031 0.92726 0.91963 0.97799 0.85375 1.22007 0.95560 0.99781 1.01565 0.91347 0.93459 0.96552 0.93653 0.88162 0.89582 0.91049 0.88547 0.76988 0.94014 0.91271 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 8.75 71.98 0.63 -5.54 16 2 C 0.19 8.76 0.73 44.17 0.03 8.79 16 3 H -0.02 -0.89 4.89 -2.39 -0.01 -0.90 16 4 C -0.58 -28.33 5.40 25.60 0.14 -28.19 16 5 H 0.07 3.07 6.14 -2.91 -0.02 3.05 16 6 C -0.02 -1.21 5.05 84.65 0.43 -0.79 16 7 N -0.94 -54.22 13.62 21.45 0.29 -53.93 16 8 Si 1.11 46.17 29.91 68.60 2.05 48.22 16 9 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 10 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.52 -19.69 4.82 -854.71 -4.12 -23.81 16 13 C 0.06 1.90 5.47 86.24 0.47 2.37 16 14 C 0.07 2.42 6.49 86.47 0.56 2.98 16 15 N -0.71 -25.95 5.44 -466.10 -2.53 -28.49 16 16 C 0.49 19.38 6.46 87.68 0.57 19.94 16 17 O -0.60 -27.33 17.10 -3.02 -0.05 -27.38 16 18 C 0.07 2.37 3.00 44.03 0.13 2.50 16 19 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 20 C -0.13 -4.54 7.09 71.98 0.51 -4.03 16 21 H 0.07 2.63 3.80 -2.39 -0.01 2.62 16 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.25 15.16 6.64 -92.71 -0.62 14.54 16 25 H 0.10 3.43 6.14 -2.39 -0.01 3.42 16 26 H 0.09 2.37 8.08 -2.39 -0.02 2.35 16 27 H 0.07 3.11 5.51 -2.39 -0.01 3.10 16 28 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 29 H 0.40 13.41 8.84 -92.70 -0.82 12.59 16 30 H 0.04 1.66 5.53 -2.38 -0.01 1.65 16 31 H 0.07 2.25 7.87 -2.39 -0.02 2.23 16 32 H 0.09 2.83 6.96 -2.39 -0.02 2.82 16 Total: -1.00 -62.05 243.62 -0.42 -62.47 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.47 Total: 24.88 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 3.47 Total: -1.96 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -6.36 Total: -106.22 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.05 Total: 48.22 kcal Total: -62.05 -0.42 -62.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082475401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.151 kcal (2) G-P(sol) polarization free energy of solvation -62.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds