Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46503 * 2 1 4 4 C 1.50697 * 109.46966 * 119.99443 * 2 1 3 5 5 H 1.08002 * 119.99974 * 120.00619 * 4 2 1 6 6 C 1.37875 * 120.00064 * 300.00366 * 4 2 1 7 7 N 1.31517 * 120.00255 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00005 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46994 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47413 * 119.99894 * 8 6 4 11 11 H 1.48500 * 109.47088 * 240.00134 * 8 6 4 12 12 C 1.50694 * 109.47469 * 239.99977 * 2 1 3 13 13 O 1.21282 * 120.00135 * 335.31153 * 12 2 1 14 14 N 1.34779 * 120.00321 * 155.31397 * 12 2 1 15 15 C 1.47142 * 120.86638 * 355.31770 * 14 12 2 16 16 C 1.53241 * 108.48907 * 128.80857 * 15 14 12 17 17 N 1.46901 * 109.35771 * 53.82321 * 16 15 14 18 18 C 1.46897 * 111.26967 * 296.87696 * 17 16 15 19 19 C 1.47073 * 120.88461 * 175.30095 * 14 12 2 20 20 H 1.09003 * 109.47194 * 65.17409 * 1 2 3 21 21 H 1.09001 * 109.46920 * 185.16509 * 1 2 3 22 22 H 1.09000 * 109.47491 * 305.16910 * 1 2 3 23 23 H 0.96995 * 119.99859 * 180.02562 * 7 6 4 24 24 H 1.09005 * 109.66069 * 9.09963 * 15 14 12 25 25 H 1.08996 * 109.62544 * 248.50506 * 15 14 12 26 26 H 1.09003 * 109.49335 * 293.85383 * 16 15 14 27 27 H 1.08994 * 109.49007 * 173.79594 * 16 15 14 28 28 H 1.00897 * 110.99702 * 172.73319 * 17 16 15 29 29 H 1.08999 * 109.49414 * 183.06612 * 18 17 16 30 30 H 1.09001 * 109.49852 * 303.12230 * 18 17 16 31 31 H 1.08999 * 109.62837 * 111.49142 * 19 14 12 32 32 H 1.09000 * 109.62877 * 350.91730 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9426 0.8298 2.6033 8 14 2.3224 -1.1192 4.0080 9 1 3.1484 -2.2853 3.6039 10 1 3.1471 -0.1854 4.8161 11 1 1.1677 -1.5863 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 1.3349 -1.5352 -1.7817 14 7 3.2570 -0.4291 -1.7182 15 6 4.0780 0.6392 -1.1269 16 6 5.4668 0.0701 -0.8177 17 7 6.0235 -0.5419 -2.0316 18 6 5.2075 -1.6790 -2.4775 19 6 3.8079 -1.1821 -2.8551 20 1 -0.3634 0.4315 -0.9327 21 1 -0.3633 -1.0235 0.0925 22 1 -0.3634 0.5919 0.8400 23 1 0.7085 1.1614 3.4843 24 1 3.6134 0.9917 -0.2060 25 1 4.1692 1.4643 -1.8334 26 1 5.3849 -0.6840 -0.0350 27 1 6.1224 0.8734 -0.4818 28 1 6.9831 -0.8193 -1.8892 29 1 5.6748 -2.1440 -3.3455 30 1 5.1295 -2.4090 -1.6717 31 1 3.8732 -0.5321 -3.7276 32 1 3.1644 -2.0335 -3.0767 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082635189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = -57.681168 kcal Electronic energy + Delta-G solvation = -14849.028168 eV Core-core repulsion = 12422.380904 eV Total energy + Delta-G solvation = -2426.647263 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03208 -38.49128 -35.89196 -34.53575 -32.68430 -31.74551 -27.75919 -27.24035 -24.98909 -23.87088 -21.79249 -19.81460 -18.49595 -18.33648 -17.03787 -16.48766 -16.18412 -16.03901 -15.63615 -15.28144 -14.72342 -14.44870 -13.68476 -13.64751 -13.26497 -12.94805 -12.80053 -12.58686 -12.41695 -12.23826 -12.21079 -12.06571 -11.95443 -11.10374 -10.64062 -10.30718 -9.83688 -9.29863 -8.18720 -6.33555 1.39035 1.42060 1.52154 1.85237 2.20713 2.42679 3.10431 3.25758 3.87774 4.05152 4.12946 4.29369 4.40198 4.45615 4.60898 4.73673 4.80684 4.87307 4.90219 4.95485 5.07957 5.14376 5.43323 5.59389 5.73880 5.82913 5.91932 6.11778 6.43302 6.57899 6.68759 7.31620 7.41988 8.87467 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030798 B = 0.011322 C = 0.009465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.934552 B = 2472.384311 C = 2957.439129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.028 3.972 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.905 5.905 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.269 1.269 11 H -0.281 1.281 12 C 0.523 3.477 13 O -0.602 6.602 14 N -0.618 5.618 15 C 0.110 3.890 16 C 0.050 3.950 17 N -0.682 5.682 18 C 0.052 3.948 19 C 0.108 3.892 20 H 0.022 0.978 21 H 0.019 0.981 22 H 0.072 0.928 23 H 0.268 0.732 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.019 0.981 27 H 0.111 0.889 28 H 0.358 0.642 29 H 0.114 0.886 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.907 0.142 -5.780 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.008 3.992 3 H 0.063 0.937 4 C -0.560 4.560 5 H 0.059 0.941 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.194 1.194 11 H -0.206 1.206 12 C 0.315 3.685 13 O -0.484 6.484 14 N -0.351 5.351 15 C -0.013 4.013 16 C -0.080 4.080 17 N -0.315 5.315 18 C -0.078 4.078 19 C -0.014 4.014 20 H 0.041 0.959 21 H 0.038 0.962 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.038 0.962 27 H 0.129 0.871 28 H 0.178 0.822 29 H 0.132 0.868 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.175 0.287 -6.359 12.002 hybrid contribution 0.116 -1.147 1.533 1.918 sum 10.290 -0.860 -4.826 11.398 Atomic orbital electron populations 1.21450 0.96765 0.99429 0.99306 1.18858 0.94283 0.96308 0.89793 0.93664 1.20797 1.32418 1.12443 0.90369 0.94085 1.25582 0.94775 0.95494 1.01376 1.69981 1.36346 1.23391 1.24581 0.85500 0.78241 0.78634 0.79237 1.20017 1.19370 1.20648 1.21703 0.80532 0.81585 0.84702 1.90484 1.57883 1.37649 1.62395 1.48278 1.16426 1.36845 1.33564 1.21985 0.90573 0.89275 0.99452 1.22243 0.95644 0.99503 0.90657 1.60295 1.06387 1.31145 1.33666 1.22251 0.93237 0.91666 1.00682 1.21745 0.94223 0.96596 0.88878 0.95940 0.96161 0.90954 0.92295 0.89493 0.89980 0.96219 0.87078 0.82206 0.86756 0.96498 0.90053 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 8.33 71.98 0.60 -5.25 16 2 C 0.03 1.47 1.81 -12.29 -0.02 1.45 16 3 H 0.05 2.34 6.36 -2.38 -0.02 2.32 16 4 C -0.52 -28.54 8.33 25.60 0.21 -28.33 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.52 5.30 84.65 0.45 1.97 16 7 N -0.91 -49.52 11.38 21.45 0.24 -49.27 16 8 Si 0.96 42.33 29.54 68.60 2.03 44.35 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.52 25.60 6.75 87.65 0.59 26.19 16 13 O -0.60 -32.68 15.67 -3.03 -0.05 -32.73 16 14 N -0.62 -24.37 3.01 -817.79 -2.46 -26.83 16 15 C 0.11 3.67 6.42 86.34 0.55 4.22 16 16 C 0.05 1.36 6.69 86.38 0.58 1.93 16 17 N -0.68 -15.84 6.82 -513.02 -3.50 -19.34 16 18 C 0.05 1.32 6.70 86.38 0.58 1.90 16 19 C 0.11 3.50 6.58 86.35 0.57 4.07 16 20 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.02 1.07 8.04 -2.39 -0.02 1.06 16 22 H 0.07 3.93 6.22 -2.39 -0.01 3.92 16 23 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 24 H 0.09 3.35 5.43 -2.38 -0.01 3.33 16 25 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.36 6.30 8.90 -89.70 -0.80 5.51 16 29 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.02 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.54 7.09 -2.39 -0.02 2.53 16 Total: -1.00 -64.59 259.73 0.69 -63.90 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.31 Total: 11.76 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 4.11 Total: 8.16 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -5.72 Total: -95.44 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.05 Total: -32.73 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -64.59 0.69 -63.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082635189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.221 kcal (2) G-P(sol) polarization free energy of solvation -64.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds