Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50700 * 109.47118 * 240.00200 * 2 1 3 5 5 H 1.07999 * 120.00231 * 245.28864 * 4 2 1 6 6 C 1.37884 * 119.99961 * 65.28729 * 4 2 1 7 7 N 1.31516 * 119.99777 * 5.49262 * 6 4 2 8 8 Si 1.86798 * 119.99986 * 185.48737 * 6 4 2 9 9 H 1.48500 * 109.46953 * 94.99885 * 8 6 4 10 10 H 1.48498 * 109.47421 * 215.00345 * 8 6 4 11 11 H 1.48502 * 109.47133 * 335.00044 * 8 6 4 12 12 C 1.50688 * 109.47263 * 119.99945 * 2 1 3 13 13 O 1.21280 * 120.00341 * 112.20435 * 12 2 1 14 14 N 1.34779 * 120.00591 * 292.20302 * 12 2 1 15 15 C 1.47080 * 120.88656 * 176.51979 * 14 12 2 16 16 C 1.53238 * 108.51812 * 128.83892 * 15 14 12 17 17 N 1.46906 * 109.33991 * 53.83325 * 16 15 14 18 18 C 1.46900 * 111.26690 * 296.89003 * 17 16 15 19 19 C 1.47078 * 120.87581 * 356.54488 * 14 12 2 20 20 H 1.08991 * 109.47098 * 294.69006 * 1 2 3 21 21 H 1.09002 * 109.47394 * 54.69584 * 1 2 3 22 22 H 1.08999 * 109.47017 * 174.69257 * 1 2 3 23 23 H 0.97001 * 119.99100 * 180.02562 * 7 6 4 24 24 H 1.08998 * 109.62253 * 9.13264 * 15 14 12 25 25 H 1.08998 * 109.78672 * 248.64124 * 15 14 12 26 26 H 1.08994 * 109.49471 * 293.87270 * 16 15 14 27 27 H 1.08996 * 109.51356 * 173.80216 * 16 15 14 28 28 H 1.00896 * 110.99765 * 61.04474 * 17 16 15 29 29 H 1.08995 * 109.48765 * 183.06413 * 18 17 16 30 30 H 1.08993 * 109.49322 * 303.14662 * 18 17 16 31 31 H 1.08998 * 109.63363 * 350.87548 * 19 14 12 32 32 H 1.09007 * 109.62996 * 111.45118 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5810 -1.6356 -1.1338 6 6 1.7915 -0.1791 -2.4799 7 7 1.2193 0.9995 -2.5940 8 14 2.2781 -1.1334 -4.0102 9 1 1.1101 -1.9066 -4.5036 10 1 2.7252 -0.1862 -5.0629 11 1 3.3857 -2.0660 -3.6807 12 6 2.0323 -0.7103 1.2304 13 8 2.6087 -1.7722 1.1248 14 7 1.8412 -0.1657 2.4483 15 6 2.2554 -0.8774 3.6670 16 6 3.1066 0.0706 4.5186 17 7 2.3638 1.3169 4.7492 18 6 2.1045 2.0237 3.4878 19 6 1.2123 1.1558 2.5939 20 1 -0.3633 0.4292 0.9336 21 1 -0.3634 0.5939 -0.8387 22 1 -0.3633 -1.0233 -0.0951 23 1 1.0495 1.3730 -3.4730 24 1 2.8434 -1.7545 3.3968 25 1 1.3754 -1.1860 4.2312 26 1 4.0368 0.2929 3.9959 27 1 3.3307 -0.4015 5.4751 28 1 1.5046 1.1388 5.2473 29 1 1.6015 2.9678 3.6968 30 1 3.0487 2.2189 2.9795 31 1 1.1105 1.6229 1.6144 32 1 0.2302 1.0453 3.0538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082635190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -35.823559 kcal Electronic energy + Delta-G solvation = -14736.990997 eV Core-core repulsion = 12311.291551 eV Total energy + Delta-G solvation = -2425.699446 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62434 -37.14011 -33.88066 -33.01285 -31.26691 -30.09379 -26.01573 -25.16394 -23.44513 -22.59006 -20.90253 -18.71329 -16.48554 -16.00197 -15.37891 -15.00993 -14.80008 -14.64636 -14.33459 -13.35639 -13.10986 -12.96931 -12.47103 -12.09701 -11.51871 -11.26652 -11.17290 -11.07331 -10.94526 -10.82276 -10.59450 -10.32533 -9.96139 -9.00522 -8.93190 -8.54944 -8.36981 -7.81705 -6.06909 -4.06658 3.32726 3.38898 3.44852 3.56501 3.66132 4.30466 4.46117 5.04892 5.15421 5.27769 5.30684 5.32953 5.35170 5.73390 5.81129 5.92988 6.03826 6.11489 6.18787 6.56202 6.75847 6.85461 6.93147 7.04537 7.32831 7.40093 7.63732 7.95430 8.00971 8.35954 9.02064 9.18154 9.58023 11.03538 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052077 B = 0.008515 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.536635 B = 3287.391157 C = 3542.888666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.056 0.944 4 C -0.503 4.503 5 H 0.073 0.927 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.523 3.477 13 O -0.545 6.545 14 N -0.629 5.629 15 C 0.071 3.929 16 C 0.044 3.956 17 N -0.686 5.686 18 C 0.041 3.959 19 C 0.072 3.928 20 H 0.018 0.982 21 H 0.078 0.922 22 H 0.034 0.966 23 H 0.261 0.739 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.338 0.662 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 2.479 11.797 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.010 3.990 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.315 3.685 13 O -0.421 6.421 14 N -0.366 5.366 15 C -0.053 4.053 16 C -0.086 4.086 17 N -0.315 5.315 18 C -0.090 4.090 19 C -0.053 4.053 20 H 0.037 0.963 21 H 0.096 0.904 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.155 0.845 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.307 2.388 11.722 11.967 hybrid contribution -0.600 -0.962 -1.213 1.660 sum -0.907 1.426 10.509 10.644 Atomic orbital electron populations 1.21747 0.96696 1.00543 0.99674 1.18847 0.93817 0.97056 0.89289 0.92677 1.21138 1.35041 1.08789 0.89160 0.90865 1.24950 0.95226 0.94827 0.99111 1.69933 1.43730 1.16068 1.23795 0.86463 0.78897 0.79782 0.82265 1.20685 1.21266 1.19693 1.22056 0.76880 0.85402 0.84155 1.90515 1.41984 1.23590 1.85996 1.48385 1.62922 1.19289 1.05979 1.22149 0.98918 0.97226 0.87052 1.22380 0.97463 0.89412 0.99341 1.60671 1.26342 1.23322 1.21133 1.22447 1.00408 0.96656 0.89452 1.22467 0.95465 0.84317 1.03007 0.96274 0.90364 0.94656 0.92963 0.88996 0.92648 0.90520 0.90069 0.84501 0.89713 0.90321 0.87855 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.60 37.16 0.32 -2.63 16 2 C 0.03 0.78 1.66 -92.93 -0.15 0.62 16 3 H 0.06 1.43 7.07 -51.93 -0.37 1.06 16 4 C -0.50 -14.44 8.31 -34.44 -0.29 -14.73 16 5 H 0.07 2.23 6.78 -52.49 -0.36 1.88 16 6 C 0.06 1.68 5.28 -17.82 -0.09 1.58 16 7 N -0.90 -25.27 12.00 55.43 0.67 -24.60 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 12.31 6.99 -10.99 -0.08 12.24 16 13 O -0.55 -14.61 14.94 5.56 0.08 -14.52 16 14 N -0.63 -11.50 3.01 -172.47 -0.52 -12.02 16 15 C 0.07 1.09 6.58 -3.60 -0.02 1.07 16 16 C 0.04 0.56 6.70 -3.70 -0.02 0.54 16 17 N -0.69 -8.16 6.85 -113.51 -0.78 -8.94 16 18 C 0.04 0.51 6.70 -3.70 -0.02 0.49 16 19 C 0.07 1.08 5.05 -3.60 -0.02 1.07 16 20 H 0.02 0.36 6.05 -51.93 -0.31 0.05 16 21 H 0.08 1.93 6.85 -51.93 -0.36 1.57 16 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.09 1.57 7.05 -51.93 -0.37 1.21 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.34 3.46 8.83 -39.29 -0.35 3.11 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.71 5.20 -51.93 -0.27 1.44 16 32 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 LS Contribution 256.65 15.07 3.87 3.87 Total: -1.00 -31.33 256.65 -6.55 -37.88 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.47 Total: 1.14 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.38 Total: 0.24 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.63 Total: -45.56 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.52 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.33 -6.55 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082635190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.060 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds