Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50700 * 109.47118 * 240.00200 * 2 1 3 5 5 H 1.07999 * 120.00231 * 245.28864 * 4 2 1 6 6 C 1.37884 * 119.99961 * 65.28729 * 4 2 1 7 7 N 1.31516 * 119.99777 * 5.49262 * 6 4 2 8 8 Si 1.86798 * 119.99986 * 185.48737 * 6 4 2 9 9 H 1.48500 * 109.46953 * 94.99885 * 8 6 4 10 10 H 1.48498 * 109.47421 * 215.00345 * 8 6 4 11 11 H 1.48502 * 109.47133 * 335.00044 * 8 6 4 12 12 C 1.50688 * 109.47263 * 119.99945 * 2 1 3 13 13 O 1.21280 * 120.00341 * 112.20435 * 12 2 1 14 14 N 1.34779 * 120.00591 * 292.20302 * 12 2 1 15 15 C 1.47080 * 120.88656 * 176.51979 * 14 12 2 16 16 C 1.53238 * 108.51812 * 128.83892 * 15 14 12 17 17 N 1.46906 * 109.33991 * 53.83325 * 16 15 14 18 18 C 1.46900 * 111.26690 * 296.89003 * 17 16 15 19 19 C 1.47078 * 120.87581 * 356.54488 * 14 12 2 20 20 H 1.08991 * 109.47098 * 294.69006 * 1 2 3 21 21 H 1.09002 * 109.47394 * 54.69584 * 1 2 3 22 22 H 1.08999 * 109.47017 * 174.69257 * 1 2 3 23 23 H 0.97001 * 119.99100 * 180.02562 * 7 6 4 24 24 H 1.08998 * 109.62253 * 9.13264 * 15 14 12 25 25 H 1.08998 * 109.78672 * 248.64124 * 15 14 12 26 26 H 1.08994 * 109.49471 * 293.87270 * 16 15 14 27 27 H 1.08996 * 109.51356 * 173.80216 * 16 15 14 28 28 H 1.00896 * 110.99765 * 61.04474 * 17 16 15 29 29 H 1.08995 * 109.48765 * 183.06413 * 18 17 16 30 30 H 1.08993 * 109.49322 * 303.14662 * 18 17 16 31 31 H 1.08998 * 109.63363 * 350.87548 * 19 14 12 32 32 H 1.09007 * 109.62996 * 111.45118 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5810 -1.6356 -1.1338 6 6 1.7915 -0.1791 -2.4799 7 7 1.2193 0.9995 -2.5940 8 14 2.2781 -1.1334 -4.0102 9 1 1.1101 -1.9066 -4.5036 10 1 2.7252 -0.1862 -5.0629 11 1 3.3857 -2.0660 -3.6807 12 6 2.0323 -0.7103 1.2304 13 8 2.6087 -1.7722 1.1248 14 7 1.8412 -0.1657 2.4483 15 6 2.2554 -0.8774 3.6670 16 6 3.1066 0.0706 4.5186 17 7 2.3638 1.3169 4.7492 18 6 2.1045 2.0237 3.4878 19 6 1.2123 1.1558 2.5939 20 1 -0.3633 0.4292 0.9336 21 1 -0.3634 0.5939 -0.8387 22 1 -0.3633 -1.0233 -0.0951 23 1 1.0495 1.3730 -3.4730 24 1 2.8434 -1.7545 3.3968 25 1 1.3754 -1.1860 4.2312 26 1 4.0368 0.2929 3.9959 27 1 3.3307 -0.4015 5.4751 28 1 1.5046 1.1388 5.2473 29 1 1.6015 2.9678 3.6968 30 1 3.0487 2.2189 2.9795 31 1 1.1105 1.6229 1.6144 32 1 0.2302 1.0453 3.0538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082635190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -59.336450 kcal Electronic energy + Delta-G solvation = -14738.010592 eV Core-core repulsion = 12311.291551 eV Total energy + Delta-G solvation = -2426.719042 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17074 -38.61279 -35.88284 -34.49998 -32.81887 -31.69527 -27.37643 -27.25244 -24.78471 -24.09638 -22.30572 -20.26290 -18.47390 -17.77125 -17.06628 -16.37160 -16.21344 -16.06285 -15.70496 -14.84932 -14.76458 -14.49349 -14.23656 -13.66876 -13.14955 -12.96476 -12.79741 -12.61468 -12.44126 -12.33714 -12.21383 -12.09908 -11.95449 -11.09428 -10.60035 -10.41177 -10.13828 -9.07241 -8.21717 -6.28573 1.37648 1.38573 1.50726 1.83656 2.09562 2.43046 3.10516 3.31626 3.87706 3.95290 4.12881 4.18393 4.23717 4.41437 4.63931 4.68349 4.78477 4.81697 4.89065 4.93552 4.97275 5.07122 5.39817 5.60710 5.67520 5.82673 5.91166 6.11566 6.46932 6.53053 6.79439 7.34939 7.44184 8.87457 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052077 B = 0.008515 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.536635 B = 3287.391157 C = 3542.888666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.029 3.971 3 H 0.044 0.956 4 C -0.534 4.534 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.622 5.622 15 C 0.068 3.932 16 C 0.055 3.945 17 N -0.679 5.679 18 C 0.049 3.951 19 C 0.066 3.934 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.022 0.978 23 H 0.266 0.734 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.354 0.646 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 3.323 13.229 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.008 3.992 3 H 0.061 0.939 4 C -0.572 4.572 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.310 3.690 13 O -0.471 6.471 14 N -0.356 5.356 15 C -0.056 4.056 16 C -0.076 4.076 17 N -0.308 5.308 18 C -0.082 4.082 19 C -0.058 4.058 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.173 0.827 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.124 3.281 13.206 13.653 hybrid contribution -0.365 -1.177 -1.580 2.004 sum -1.489 2.104 11.626 11.908 Atomic orbital electron populations 1.21548 0.95078 0.99620 1.00842 1.18738 0.95064 0.95994 0.89364 0.93860 1.21271 1.35992 1.08488 0.91433 0.93712 1.25586 0.95084 0.95663 1.01397 1.69989 1.43648 1.16587 1.24670 0.85610 0.78523 0.78701 0.79245 1.19710 1.19810 1.20574 1.21710 0.76902 0.84876 0.85557 1.90484 1.44204 1.25457 1.86956 1.48338 1.61607 1.20311 1.05357 1.22418 1.00216 0.96927 0.86050 1.22327 0.96104 0.89232 0.99932 1.60653 1.27202 1.22556 1.20437 1.22410 0.99239 0.97452 0.89054 1.22743 0.97222 0.82743 1.03047 0.92516 0.92200 0.95891 0.92479 0.91386 0.89977 0.92463 0.86911 0.82712 0.86599 0.92234 0.89659 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.17 8.60 71.98 0.62 -4.55 16 2 C 0.03 1.51 1.66 -12.29 -0.02 1.49 16 3 H 0.04 2.31 7.07 -2.39 -0.02 2.29 16 4 C -0.53 -31.63 8.31 25.60 0.21 -31.41 16 5 H 0.04 2.86 6.78 -2.91 -0.02 2.84 16 6 C 0.02 1.27 5.28 84.66 0.45 1.72 16 7 N -0.91 -51.48 12.00 21.45 0.26 -51.22 16 8 Si 0.95 45.45 29.54 68.60 2.03 47.47 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 12 C 0.52 24.86 6.99 87.65 0.61 25.47 16 13 O -0.59 -32.88 14.94 -3.03 -0.05 -32.93 16 14 N -0.62 -22.15 3.01 -817.96 -2.46 -24.61 16 15 C 0.07 1.96 6.58 86.35 0.57 2.53 16 16 C 0.05 1.24 6.70 86.38 0.58 1.82 16 17 N -0.68 -13.68 6.85 -513.04 -3.52 -17.19 16 18 C 0.05 1.10 6.70 86.38 0.58 1.67 16 19 C 0.07 1.83 5.05 86.35 0.44 2.26 16 20 H 0.06 2.10 6.05 -2.39 -0.01 2.09 16 21 H 0.06 2.95 6.85 -2.39 -0.02 2.93 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 24 H 0.07 2.32 7.05 -2.39 -0.02 2.31 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.35 5.56 8.83 -89.70 -0.79 4.77 16 29 H 0.12 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 2.71 5.20 -2.39 -0.01 2.70 16 32 H 0.09 1.97 8.11 -2.38 -0.02 1.95 16 Total: -1.00 -69.27 256.65 0.62 -68.65 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.33 Total: 8.83 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.03 Total: 1.00 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -5.72 Total: -93.02 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.05 Total: -32.93 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.27 0.62 -68.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082635190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.315 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds