Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 13 13 C 1.47182 * 111.00328 * 68.93697 * 12 2 1 14 14 C 1.52991 * 108.71970 * 167.61864 * 13 12 2 15 15 N 1.46010 * 110.04057 * 50.30570 * 14 13 12 16 16 C 1.46499 * 118.53754 * 161.86565 * 15 14 13 17 17 C 1.33710 * 122.92619 * 341.84004 * 15 14 13 18 18 O 1.21278 * 118.62525 * 181.68914 * 17 15 14 19 19 C 1.46903 * 111.00170 * 306.04234 * 12 2 1 20 20 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 24 24 H 1.08996 * 109.59427 * 287.40929 * 13 12 2 25 25 H 1.08999 * 109.59587 * 47.85786 * 13 12 2 26 26 H 1.08999 * 109.37500 * 290.13270 * 14 13 12 27 27 H 1.09000 * 109.28634 * 170.42649 * 14 13 12 28 28 H 1.08997 * 109.47227 * 179.97438 * 16 15 14 29 29 H 1.09003 * 109.47173 * 299.97989 * 16 15 14 30 30 H 1.09002 * 109.47076 * 59.97919 * 16 15 14 31 31 H 1.09003 * 109.38694 * 293.82254 * 19 12 2 32 32 H 1.09002 * 109.38536 * 53.50932 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 7 2.0196 -0.6925 -1.1995 13 6 1.7298 0.0870 -2.4139 14 6 2.5187 -0.5103 -3.5807 15 7 2.3028 -1.9530 -3.6442 16 6 2.6225 -2.6544 -4.8900 17 6 1.8267 -2.6626 -2.6157 18 8 1.7069 -3.8626 -2.7437 19 6 1.4343 -2.0355 -1.3079 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7091 1.1614 3.4844 24 1 0.6629 0.0409 -2.6319 25 1 2.0297 1.1240 -2.2628 26 1 3.5807 -0.3095 -3.4396 27 1 2.1850 -0.0534 -4.5123 28 1 2.4072 -3.7166 -4.7744 29 1 2.0189 -2.2474 -5.7013 30 1 3.6793 -2.5209 -5.1212 31 1 1.7954 -2.6549 -0.4869 32 1 0.3481 -1.9622 -1.2531 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082774820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = -40.773685 kcal Electronic energy + Delta-G solvation = -14760.324255 eV Core-core repulsion = 12334.410155 eV Total energy + Delta-G solvation = -2425.914100 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47925 -38.71194 -36.68817 -34.68438 -31.58680 -30.58034 -28.28428 -27.33277 -25.99766 -24.15968 -21.82968 -19.35639 -18.58824 -17.77647 -17.45221 -16.96742 -16.58296 -15.68209 -15.36315 -15.07325 -14.68372 -14.10238 -13.78329 -13.62421 -13.30138 -13.09953 -13.05099 -12.69923 -12.59649 -12.42530 -12.16873 -12.01456 -11.88685 -11.01080 -10.77363 -10.48513 -9.70565 -9.06357 -8.12155 -6.22288 1.42472 1.44316 1.51628 1.53946 2.07667 2.42898 3.12987 3.19076 3.63600 3.94217 4.23267 4.38060 4.41923 4.53114 4.63014 4.68588 4.80469 4.84904 4.88596 4.95854 4.99858 5.11827 5.41743 5.49663 5.67473 5.74725 6.08265 6.32135 6.34556 6.61055 6.88249 7.08603 7.46907 8.93514 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045910 B = 0.008815 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.740438 B = 3175.792450 C = 3485.471807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.215 3.785 3 H 0.025 0.975 4 C -0.519 4.519 5 H 0.051 0.949 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.532 5.532 13 C 0.026 3.974 14 C 0.124 3.876 15 N -0.605 5.605 16 C 0.071 3.929 17 C 0.520 3.480 18 O -0.599 6.599 19 C 0.051 3.949 20 H 0.065 0.935 21 H 0.033 0.967 22 H 0.029 0.971 23 H 0.262 0.738 24 H 0.039 0.961 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 0.021 -12.566 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.109 3.891 3 H 0.043 0.957 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.102 4.102 14 C 0.002 3.998 15 N -0.337 5.337 16 C -0.071 4.071 17 C 0.309 3.691 18 O -0.481 6.481 19 C -0.080 4.080 20 H 0.084 0.916 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.128 -0.499 -12.468 12.658 hybrid contribution -0.724 -0.230 1.187 1.409 sum 1.404 -0.728 -11.281 11.391 Atomic orbital electron populations 1.22248 1.00044 0.99198 1.00698 1.19143 0.90217 0.93407 0.86358 0.95678 1.21350 1.30785 1.12527 0.91119 0.93070 1.25578 0.95320 0.95757 1.01527 1.69968 1.37592 1.23924 1.24102 0.85631 0.78141 0.78961 0.79351 1.20152 1.20854 1.19914 1.62814 1.57979 1.01455 1.03504 1.22605 0.98331 0.99226 0.90025 1.21724 1.01234 0.77595 0.99209 1.47470 1.62896 1.09838 1.13455 1.21885 1.02117 0.98469 0.84628 1.20412 0.76134 0.86548 0.86017 1.90614 1.57485 1.16362 1.83607 1.22005 0.99190 0.92664 0.94109 0.91606 0.94810 0.95169 0.92851 0.94263 0.88084 0.90240 0.86685 0.91507 0.89541 0.90234 0.89315 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.45 8.22 71.98 0.59 -6.86 16 2 C 0.22 10.30 2.31 44.17 0.10 10.41 16 3 H 0.03 1.31 7.93 -2.39 -0.02 1.29 16 4 C -0.52 -27.99 8.05 25.60 0.21 -27.79 16 5 H 0.05 2.82 7.10 -2.91 -0.02 2.80 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -51.06 11.32 21.45 0.24 -50.81 16 8 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.53 -21.45 4.68 -880.01 -4.12 -25.57 16 13 C 0.03 0.80 5.07 86.25 0.44 1.23 16 14 C 0.12 2.90 6.64 86.47 0.57 3.47 16 15 N -0.60 -17.48 3.23 -850.20 -2.74 -20.23 16 16 C 0.07 1.55 10.55 127.77 1.35 2.90 16 17 C 0.52 19.69 7.57 87.68 0.66 20.35 16 18 O -0.60 -26.01 16.07 -3.02 -0.05 -26.05 16 19 C 0.05 2.09 4.91 85.42 0.42 2.51 16 20 H 0.07 3.39 6.07 -2.39 -0.01 3.38 16 21 H 0.03 1.33 6.94 -2.39 -0.02 1.32 16 22 H 0.03 1.36 6.18 -2.39 -0.01 1.34 16 23 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 24 H 0.04 1.17 7.13 -2.39 -0.02 1.16 16 25 H 0.10 2.83 7.91 -2.39 -0.02 2.81 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.12 1.75 8.13 -2.39 -0.02 1.73 16 28 H 0.07 1.78 6.67 -2.39 -0.02 1.76 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 4.06 7.04 -2.39 -0.02 4.04 16 32 H 0.07 2.76 5.83 -2.39 -0.01 2.74 16 Total: -1.00 -64.01 254.44 1.26 -62.75 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.10 Total: 6.73 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.79 Total: 7.60 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -6.62 Total: -96.61 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.01 1.26 -62.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082774820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.979 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds