Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 120.00222 * 2 1 4 4 N 1.34782 * 119.99829 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.62976 * 179.97438 * 4 2 1 6 6 C 1.53192 * 108.77417 * 126.41133 * 5 4 2 7 7 C 1.53033 * 109.31470 * 54.63498 * 6 5 4 8 8 N 1.46906 * 109.46027 * 58.65307 * 7 6 5 9 9 C 1.50703 * 109.46426 * 178.62694 * 7 6 5 10 10 H 1.08005 * 119.99573 * 0.02562 * 9 7 6 11 11 C 1.37878 * 120.00116 * 180.02562 * 9 7 6 12 12 N 1.31512 * 120.00069 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99649 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47138 * 90.00149 * 13 11 9 15 15 H 1.48502 * 109.47321 * 209.99594 * 13 11 9 16 16 H 1.48496 * 109.47325 * 329.99875 * 13 11 9 17 17 C 1.53045 * 109.54074 * 298.63606 * 7 6 5 18 18 C 1.46928 * 120.63033 * 0.02562 * 4 2 1 19 19 H 1.09001 * 109.46913 * 270.00199 * 1 2 3 20 20 H 1.08998 * 109.47335 * 29.99984 * 1 2 3 21 21 H 1.09001 * 109.47143 * 150.00242 * 1 2 3 22 22 H 1.08998 * 109.58417 * 6.62586 * 5 4 2 23 23 H 1.09000 * 109.58691 * 246.20094 * 5 4 2 24 24 H 1.09006 * 109.49784 * 294.68278 * 6 5 4 25 25 H 1.09001 * 109.49812 * 174.58463 * 6 5 4 26 26 H 1.00902 * 110.99567 * 179.97438 * 8 7 6 27 27 H 1.00901 * 111.00013 * 303.95598 * 8 7 6 28 28 H 0.97002 * 119.99439 * 179.97438 * 12 11 9 29 29 H 1.08994 * 109.50069 * 181.31442 * 17 7 6 30 30 H 1.09004 * 109.49323 * 301.41147 * 17 7 6 31 31 H 1.08994 * 109.58761 * 353.37998 * 18 4 2 32 32 H 1.09001 * 109.58280 * 113.80115 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6500 -1.1835 -0.0011 6 6 4.1340 -2.0500 1.1658 7 6 3.4901 -3.4349 1.0688 8 7 3.8458 -4.0511 -0.2165 9 6 3.9900 -4.3012 2.1962 10 1 4.6958 -3.9036 2.9105 11 6 3.5463 -5.6011 2.3157 12 7 2.6865 -6.0850 1.4462 13 14 4.1665 -6.6749 3.7127 14 1 3.2715 -6.5239 4.8880 15 1 4.1776 -8.0949 3.2783 16 1 5.5435 -6.2597 4.0825 17 6 1.9687 -3.3001 1.1659 18 6 1.4602 -2.4477 -0.0017 19 1 -0.3633 0.0000 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 4.0266 -0.1675 0.1175 23 1 4.0105 -1.6016 -0.9409 24 1 3.8503 -1.5821 2.1086 25 1 5.2185 -2.1491 1.1201 26 1 3.4327 -4.9675 -0.3047 27 1 3.5789 -3.4580 -0.9879 28 1 2.3747 -6.9997 1.5301 29 1 1.5122 -4.2888 1.1202 30 1 1.7055 -2.8205 2.1087 31 1 0.3921 -2.2659 0.1164 32 1 1.6426 -2.9687 -0.9416 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084336325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = -36.947551 kcal Electronic energy + Delta-G solvation = -14981.114431 eV Core-core repulsion = 12555.366245 eV Total energy + Delta-G solvation = -2425.748186 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71276 -37.31804 -34.03732 -31.83632 -30.68292 -29.12435 -28.06485 -25.99928 -22.93135 -22.36996 -19.63176 -17.79236 -16.99343 -16.00873 -15.35399 -15.08876 -14.90682 -13.96955 -13.47096 -13.26748 -13.09155 -12.82399 -12.40142 -12.04473 -11.68283 -11.54426 -11.41611 -10.94743 -10.69683 -10.49333 -10.24453 -10.16902 -9.49025 -9.25979 -9.18653 -8.60522 -8.06254 -7.04493 -6.11249 -4.16426 2.97682 3.25425 3.33046 3.37505 3.50704 4.36513 4.94553 5.13976 5.34352 5.41594 5.55414 5.79565 5.88161 5.91601 6.02636 6.12736 6.19454 6.30321 6.51658 6.65794 6.84867 7.04465 7.15606 7.19176 7.63893 7.89041 7.93783 8.19508 8.54766 8.67090 9.01326 9.18379 9.51971 10.94174 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.053430 B = 0.008987 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.924791 B = 3114.691797 C = 3240.464180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.506 3.494 3 O -0.567 6.567 4 N -0.601 5.601 5 C 0.108 3.892 6 C -0.114 4.114 7 C 0.244 3.756 8 N -0.841 5.841 9 C -0.493 4.493 10 H 0.057 0.943 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.897 3.103 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.157 4.157 18 C 0.098 3.902 19 H 0.090 0.910 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.357 0.643 27 H 0.291 0.709 28 H 0.262 0.738 29 H 0.106 0.894 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 4.716 -2.989 7.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.447 6.447 4 N -0.334 5.334 5 C -0.014 4.014 6 C -0.152 4.152 7 C 0.152 3.848 8 N -0.374 5.374 9 C -0.531 4.531 10 H 0.076 0.924 11 C -0.132 4.132 12 N -0.540 5.540 13 Si 0.725 3.275 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.197 4.197 18 C -0.024 4.024 19 H 0.108 0.892 20 H 0.105 0.895 21 H 0.100 0.900 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.175 0.825 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.841 5.102 -2.766 6.959 hybrid contribution -0.849 -0.783 0.603 1.303 sum -4.690 4.319 -2.162 6.732 Atomic orbital electron populations 1.21935 0.92681 1.04257 1.04494 1.20714 0.90448 0.83341 0.75973 1.90648 1.70826 1.31339 1.51918 1.48303 1.07517 1.06115 1.71465 1.21710 0.78758 1.01057 0.99925 1.21944 1.00663 0.96639 0.95983 1.18261 0.88122 0.89374 0.89015 1.59355 1.67674 1.07898 1.02520 1.21081 1.25553 0.96644 1.09857 0.92438 1.24926 0.94451 0.97738 0.96036 1.69574 1.32252 1.15942 1.36257 0.86524 0.79321 0.79613 0.82055 1.20905 1.21254 1.19949 1.22775 1.02108 1.00378 0.94484 1.22089 0.95682 0.83687 1.00956 0.89163 0.89530 0.90013 0.90393 0.91626 0.92906 0.91380 0.82509 0.89757 0.92777 0.87629 0.93771 0.90939 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.46 36.00 0.34 -1.83 16 2 C 0.51 8.83 7.81 -10.98 -0.09 8.74 16 3 O -0.57 -11.81 16.51 5.56 0.09 -11.72 16 4 N -0.60 -10.65 2.97 -172.74 -0.51 -11.17 16 5 C 0.11 2.01 5.99 -3.71 -0.02 1.98 16 6 C -0.11 -2.36 5.02 -26.61 -0.13 -2.50 16 7 C 0.24 5.55 0.64 -132.71 -0.08 5.47 16 8 N -0.84 -18.75 8.69 -0.16 0.00 -18.75 16 9 C -0.49 -12.80 8.21 -34.44 -0.28 -13.08 16 10 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 11 C 0.07 1.78 5.21 -17.82 -0.09 1.69 16 12 N -0.90 -23.04 9.52 55.43 0.53 -22.51 16 13 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.16 -3.31 4.85 -26.58 -0.13 -3.44 16 18 C 0.10 1.67 5.78 -3.68 -0.02 1.65 16 19 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 20 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.08 0.88 6.19 -51.93 -0.32 0.56 16 22 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 23 H 0.07 1.18 6.83 -51.93 -0.35 0.82 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.36 8.55 6.93 -39.29 -0.27 8.28 16 27 H 0.29 5.82 5.59 -39.29 -0.22 5.60 16 28 H 0.26 6.52 8.31 -40.82 -0.34 6.19 16 29 H 0.11 2.46 6.03 -51.93 -0.31 2.15 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.04 5.52 -51.93 -0.29 0.75 16 32 H 0.06 1.00 7.02 -51.93 -0.36 0.64 16 LS Contribution 249.40 15.07 3.76 3.76 Total: -1.00 -27.94 249.40 -5.82 -33.76 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.15 Total: 12.42 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.51 Total: -1.32 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.01 Total: -52.43 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.94 -5.82 -33.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084336325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.192 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds