Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 120.00222 * 2 1 4 4 N 1.34782 * 119.99829 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.62976 * 179.97438 * 4 2 1 6 6 C 1.53192 * 108.77417 * 126.41133 * 5 4 2 7 7 C 1.53033 * 109.31470 * 54.63498 * 6 5 4 8 8 N 1.46906 * 109.46027 * 58.65307 * 7 6 5 9 9 C 1.50703 * 109.46426 * 178.62694 * 7 6 5 10 10 H 1.08005 * 119.99573 * 0.02562 * 9 7 6 11 11 C 1.37878 * 120.00116 * 180.02562 * 9 7 6 12 12 N 1.31512 * 120.00069 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 119.99649 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47138 * 90.00149 * 13 11 9 15 15 H 1.48502 * 109.47321 * 209.99594 * 13 11 9 16 16 H 1.48496 * 109.47325 * 329.99875 * 13 11 9 17 17 C 1.53045 * 109.54074 * 298.63606 * 7 6 5 18 18 C 1.46928 * 120.63033 * 0.02562 * 4 2 1 19 19 H 1.09001 * 109.46913 * 270.00199 * 1 2 3 20 20 H 1.08998 * 109.47335 * 29.99984 * 1 2 3 21 21 H 1.09001 * 109.47143 * 150.00242 * 1 2 3 22 22 H 1.08998 * 109.58417 * 6.62586 * 5 4 2 23 23 H 1.09000 * 109.58691 * 246.20094 * 5 4 2 24 24 H 1.09006 * 109.49784 * 294.68278 * 6 5 4 25 25 H 1.09001 * 109.49812 * 174.58463 * 6 5 4 26 26 H 1.00902 * 110.99567 * 179.97438 * 8 7 6 27 27 H 1.00901 * 111.00013 * 303.95598 * 8 7 6 28 28 H 0.97002 * 119.99439 * 179.97438 * 12 11 9 29 29 H 1.08994 * 109.50069 * 181.31442 * 17 7 6 30 30 H 1.09004 * 109.49323 * 301.41147 * 17 7 6 31 31 H 1.08994 * 109.58761 * 353.37998 * 18 4 2 32 32 H 1.09001 * 109.58280 * 113.80115 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6500 -1.1835 -0.0011 6 6 4.1340 -2.0500 1.1658 7 6 3.4901 -3.4349 1.0688 8 7 3.8458 -4.0511 -0.2165 9 6 3.9900 -4.3012 2.1962 10 1 4.6958 -3.9036 2.9105 11 6 3.5463 -5.6011 2.3157 12 7 2.6865 -6.0850 1.4462 13 14 4.1665 -6.6749 3.7127 14 1 3.2715 -6.5239 4.8880 15 1 4.1776 -8.0949 3.2783 16 1 5.5435 -6.2597 4.0825 17 6 1.9687 -3.3001 1.1659 18 6 1.4602 -2.4477 -0.0017 19 1 -0.3633 0.0000 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 4.0266 -0.1675 0.1175 23 1 4.0105 -1.6016 -0.9409 24 1 3.8503 -1.5821 2.1086 25 1 5.2185 -2.1491 1.1201 26 1 3.4327 -4.9675 -0.3047 27 1 3.5789 -3.4580 -0.9879 28 1 2.3747 -6.9997 1.5301 29 1 1.5122 -4.2888 1.1202 30 1 1.7055 -2.8205 2.1087 31 1 0.3921 -2.2659 0.1164 32 1 1.6426 -2.9687 -0.9416 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084336325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = -56.284472 kcal Electronic energy + Delta-G solvation = -14981.952943 eV Core-core repulsion = 12555.366245 eV Total energy + Delta-G solvation = -2426.586698 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17505 -38.92060 -35.69669 -33.59009 -32.24051 -30.45567 -29.70559 -27.78260 -24.57418 -23.94440 -21.16302 -19.40017 -18.56532 -17.73248 -16.86218 -16.72485 -16.41319 -15.73900 -14.99387 -14.85094 -14.69391 -14.28531 -13.72826 -13.65281 -13.21942 -12.99765 -12.82277 -12.74257 -12.48386 -12.16712 -12.00348 -11.90289 -11.19299 -10.97189 -10.78781 -10.53763 -9.57542 -8.81503 -8.05882 -6.17041 1.41632 1.45695 1.53319 1.63738 2.14186 2.45985 3.17555 3.70887 4.08522 4.24262 4.30942 4.41375 4.48421 4.52713 4.58887 4.66367 4.70719 4.89469 4.94571 5.08246 5.18472 5.37522 5.49377 5.54693 5.74524 6.09935 6.32854 6.52275 6.72047 7.14871 7.18200 7.40178 7.53866 8.96101 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.053430 B = 0.008987 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.924791 B = 3114.691797 C = 3240.464180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.499 3.501 3 O -0.606 6.606 4 N -0.604 5.604 5 C 0.115 3.885 6 C -0.106 4.106 7 C 0.236 3.764 8 N -0.843 5.843 9 C -0.521 4.521 10 H 0.040 0.960 11 C 0.035 3.965 12 N -0.905 5.905 13 Si 0.946 3.054 14 H -0.280 1.280 15 H -0.283 1.283 16 H -0.281 1.281 17 C -0.148 4.148 18 C 0.108 3.892 19 H 0.105 0.895 20 H 0.101 0.899 21 H 0.104 0.896 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.348 0.652 27 H 0.307 0.693 28 H 0.263 0.737 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.109 0.891 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 4.806 -3.587 8.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.291 3.709 3 O -0.489 6.489 4 N -0.336 5.336 5 C -0.008 4.008 6 C -0.145 4.145 7 C 0.145 3.855 8 N -0.376 5.376 9 C -0.560 4.560 10 H 0.058 0.942 11 C -0.165 4.165 12 N -0.545 5.545 13 Si 0.773 3.227 14 H -0.206 1.206 15 H -0.208 1.208 16 H -0.206 1.206 17 C -0.189 4.189 18 C -0.014 4.014 19 H 0.123 0.877 20 H 0.120 0.880 21 H 0.123 0.877 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.165 0.835 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.127 0.873 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.191 5.192 -3.372 8.079 hybrid contribution -0.402 -0.809 0.807 1.211 sum -5.594 4.383 -2.565 7.555 Atomic orbital electron populations 1.21974 0.88380 1.06178 1.05990 1.21641 0.92478 0.82304 0.74513 1.90634 1.72115 1.32579 1.53535 1.48365 1.07008 1.06741 1.71471 1.21533 0.79946 1.00198 0.99138 1.21809 1.00079 0.96170 0.96460 1.18282 0.89419 0.89544 0.88295 1.59235 1.67812 1.07675 1.02911 1.21346 1.25864 0.97765 1.10982 0.94216 1.25431 0.94750 0.98520 0.97761 1.69648 1.32196 1.16006 1.36642 0.85759 0.78427 0.78348 0.80122 1.20603 1.20849 1.20635 1.22538 1.00701 1.00032 0.95644 1.22034 0.97396 0.82675 0.99311 0.87676 0.88036 0.87736 0.90841 0.90704 0.94172 0.92262 0.83498 0.88132 0.92726 0.89630 0.95248 0.87346 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 9.46 71.24 0.67 -2.82 16 2 C 0.50 16.23 7.81 87.66 0.68 16.91 16 3 O -0.61 -24.45 16.51 -3.03 -0.05 -24.50 16 4 N -0.60 -20.15 2.97 -818.80 -2.43 -22.58 16 5 C 0.11 4.16 5.99 86.36 0.52 4.68 16 6 C -0.11 -4.44 5.02 30.67 0.15 -4.28 16 7 C 0.24 10.71 0.64 2.81 0.00 10.72 16 8 N -0.84 -36.97 8.69 -154.41 -1.34 -38.31 16 9 C -0.52 -27.36 8.21 25.60 0.21 -27.15 16 10 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 11 C 0.04 1.81 5.21 84.66 0.44 2.25 16 12 N -0.90 -45.90 9.52 21.45 0.20 -45.69 16 13 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 C -0.15 -6.12 4.85 30.69 0.15 -5.97 16 18 C 0.11 3.38 5.78 86.38 0.50 3.88 16 19 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 20 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.10 1.73 6.19 -2.39 -0.01 1.71 16 22 H 0.07 2.75 7.00 -2.39 -0.02 2.73 16 23 H 0.07 2.57 6.83 -2.39 -0.02 2.56 16 24 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 26 H 0.35 16.45 6.93 -89.69 -0.62 15.83 16 27 H 0.31 11.77 5.59 -89.69 -0.50 11.27 16 28 H 0.26 12.89 8.31 -92.71 -0.77 12.12 16 29 H 0.09 3.91 6.03 -2.39 -0.01 3.90 16 30 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.11 2.65 5.52 -2.39 -0.01 2.64 16 32 H 0.07 2.07 7.02 -2.39 -0.02 2.05 16 Total: -1.00 -59.46 249.40 1.75 -57.71 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.02 Total: 31.00 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 3.33 Total: -1.79 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -3.57 Total: -106.58 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -59.46 1.75 -57.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084336325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.421 kcal (2) G-P(sol) polarization free energy of solvation -59.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds