Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.53933 * 113.73593 * 276.73588 * 16 14 12 18 18 N 1.47961 * 86.17705 * 221.91816 * 17 16 14 19 19 C 1.47959 * 90.76373 * 24.69042 * 18 17 16 20 20 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 25 25 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 26 26 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 27 27 H 1.09007 * 112.93122 * 48.44062 * 16 14 12 28 28 H 1.09002 * 113.75708 * 336.23459 * 17 16 14 29 29 H 1.08998 * 113.76024 * 107.60027 * 17 16 14 30 30 H 1.00908 * 110.99870 * 137.58569 * 18 17 16 31 31 H 1.09000 * 113.75393 * 220.98947 * 19 18 17 32 32 H 1.08998 * 113.85966 * 89.63961 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.5674 -1.5792 -3.0717 18 7 5.0433 -1.0470 -4.3677 19 6 4.1666 0.1364 -4.2262 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.7089 1.1611 3.4845 24 1 0.7376 -2.1442 -1.9996 25 1 2.4629 -2.5817 -1.9866 26 1 1.5295 -2.5968 -0.4711 27 1 2.5105 -1.2846 -3.8438 28 1 5.1556 -1.2448 -2.2171 29 1 4.3945 -2.6554 -3.0757 30 1 6.0163 -0.7847 -4.3156 31 1 3.6736 0.4310 -5.1527 32 1 4.6361 0.9736 -3.7096 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084412067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -3.035490 kcal Electronic energy + Delta-G solvation = -14617.397637 eV Core-core repulsion = 12193.119988 eV Total energy + Delta-G solvation = -2424.277649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.07308 -37.67988 -35.26879 -32.84901 -29.80455 -27.62294 -26.06336 -25.89205 -25.22986 -22.04445 -19.73630 -18.41382 -17.04529 -16.27611 -16.12453 -15.36459 -14.68044 -14.19336 -13.74681 -13.36098 -12.71701 -12.46837 -12.33092 -12.26699 -11.63837 -11.47670 -11.10853 -10.97937 -10.86907 -10.79957 -10.59491 -10.27604 -10.18006 -9.21624 -9.07672 -8.80583 -8.44238 -7.59711 -6.09000 -4.17213 3.24358 3.27773 3.32174 3.35025 3.89967 4.13756 4.37932 4.68106 5.00898 5.22034 5.38596 5.41574 5.47759 5.70435 5.80898 5.87122 6.03735 6.04920 6.16478 6.37349 6.74761 6.83272 7.05858 7.18645 7.41756 7.52566 7.70342 8.00386 8.18690 8.52496 8.81235 9.03969 9.49346 10.96316 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042607 B = 0.008563 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.016687 B = 3268.987207 C = 3447.907257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.589 5.589 13 C 0.084 3.916 14 C 0.508 3.492 15 O -0.554 6.554 16 C -0.141 4.141 17 C 0.024 3.976 18 N -0.639 5.639 19 C 0.026 3.974 20 H 0.011 0.989 21 H 0.029 0.971 22 H 0.093 0.907 23 H 0.263 0.737 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.319 0.681 31 H 0.088 0.912 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -5.641 -9.062 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.320 5.320 13 C -0.060 4.060 14 C 0.294 3.706 15 O -0.434 6.434 16 C -0.163 4.163 17 C -0.107 4.107 18 N -0.263 5.263 19 C -0.104 4.104 20 H 0.030 0.970 21 H 0.049 0.951 22 H 0.111 0.889 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.956 -5.411 -9.407 11.248 hybrid contribution 0.571 -0.038 1.637 1.734 sum 3.527 -5.450 -7.770 10.125 Atomic orbital electron populations 1.22079 0.98182 0.99406 1.00779 1.18945 0.90914 0.94514 0.80015 0.91988 1.21319 1.31862 1.12993 0.90318 0.92250 1.24906 0.94965 0.94968 0.98990 1.69884 1.36354 1.22551 1.23769 0.86492 0.79176 0.79307 0.82397 1.20581 1.19946 1.21086 1.48229 1.48582 1.11675 1.23485 1.21613 0.98839 0.83280 1.02314 1.20251 0.79159 0.86965 0.84182 1.90635 1.58646 1.17154 1.76926 1.23205 0.98363 0.98652 0.96093 1.23588 0.94310 1.00503 0.92304 1.66916 1.08540 1.20131 1.30723 1.23579 0.94336 0.93469 0.99060 0.97037 0.95147 0.88860 0.92664 0.93914 0.92693 0.90109 0.86812 0.90949 0.88948 0.86913 0.89348 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.58 2.64 -69.09 -0.18 6.40 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -14.19 7.99 -34.44 -0.28 -14.46 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.59 -12.58 2.75 -175.26 -0.48 -13.06 16 13 C 0.08 1.40 9.09 59.85 0.54 1.94 16 14 C 0.51 10.52 7.21 -10.99 -0.08 10.44 16 15 O -0.55 -13.67 15.22 5.56 0.08 -13.59 16 16 C -0.14 -2.17 2.95 -90.84 -0.27 -2.44 16 17 C 0.02 0.32 7.74 -2.77 -0.02 0.30 16 18 N -0.64 -8.13 8.53 -117.10 -1.00 -9.13 16 19 C 0.03 0.37 8.25 -2.77 -0.02 0.34 16 20 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 21 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 22 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.76 5.90 -51.92 -0.31 0.45 16 26 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 27 H 0.11 1.56 7.83 -51.92 -0.41 1.16 16 28 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.09 1.09 7.80 -51.93 -0.41 0.69 16 30 H 0.32 3.53 8.91 -39.29 -0.35 3.18 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.27 7.41 -51.93 -0.38 0.89 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -30.57 262.50 -6.40 -36.96 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.50 Total: 2.47 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.07 Total: 0.98 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.85 Total: -46.72 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.57 -6.40 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084412067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.929 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds