Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.53933 * 113.73593 * 276.73588 * 16 14 12 18 18 N 1.47961 * 86.17705 * 221.91816 * 17 16 14 19 19 C 1.47959 * 90.76373 * 24.69042 * 18 17 16 20 20 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 25 25 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 26 26 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 27 27 H 1.09007 * 112.93122 * 48.44062 * 16 14 12 28 28 H 1.09002 * 113.75708 * 336.23459 * 17 16 14 29 29 H 1.08998 * 113.76024 * 107.60027 * 17 16 14 30 30 H 1.00908 * 110.99870 * 137.58569 * 18 17 16 31 31 H 1.09000 * 113.75393 * 220.98947 * 19 18 17 32 32 H 1.08998 * 113.85966 * 89.63961 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.5674 -1.5792 -3.0717 18 7 5.0433 -1.0470 -4.3677 19 6 4.1666 0.1364 -4.2262 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.7089 1.1611 3.4845 24 1 0.7376 -2.1442 -1.9996 25 1 2.4629 -2.5817 -1.9866 26 1 1.5295 -2.5968 -0.4711 27 1 2.5105 -1.2846 -3.8438 28 1 5.1556 -1.2448 -2.2171 29 1 4.3945 -2.6554 -3.0757 30 1 6.0163 -0.7847 -4.3156 31 1 3.6736 0.4310 -5.1527 32 1 4.6361 0.9736 -3.7096 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084412067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -26.324315 kcal Electronic energy + Delta-G solvation = -14618.407516 eV Core-core repulsion = 12193.119988 eV Total energy + Delta-G solvation = -2425.287528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46495 -39.11642 -37.07222 -34.79405 -31.66250 -28.94510 -27.54565 -27.30971 -26.98939 -23.69836 -21.28016 -19.81657 -18.68780 -18.14997 -17.55984 -16.90150 -16.39482 -15.74024 -15.35169 -14.55332 -14.48298 -13.96419 -13.81950 -13.62201 -13.50445 -13.06309 -12.82613 -12.72013 -12.65711 -12.22507 -12.16564 -12.10417 -11.82869 -11.20099 -10.68408 -10.49193 -10.00890 -9.33731 -8.15790 -6.32654 1.40700 1.42234 1.52068 1.71999 2.29328 2.48219 3.01956 3.12095 3.47205 3.73129 4.14927 4.29262 4.35660 4.47736 4.73679 4.73926 4.76306 4.79951 4.88019 4.95422 5.01221 5.06257 5.08913 5.46332 5.59274 5.66066 6.02534 6.15251 6.19371 6.75588 6.82553 7.30015 7.46426 8.88711 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042607 B = 0.008563 C = 0.008119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.016687 B = 3268.987207 C = 3447.907257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.269 1.269 11 H -0.287 1.287 12 N -0.597 5.597 13 C 0.080 3.920 14 C 0.499 3.501 15 O -0.606 6.606 16 C -0.135 4.135 17 C 0.029 3.971 18 N -0.626 5.626 19 C 0.026 3.974 20 H 0.019 0.981 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.264 0.736 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.331 0.669 31 H 0.105 0.895 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -8.045 -9.981 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.194 1.194 11 H -0.212 1.212 12 N -0.326 5.326 13 C -0.062 4.062 14 C 0.287 3.713 15 O -0.489 6.489 16 C -0.157 4.157 17 C -0.101 4.101 18 N -0.252 5.252 19 C -0.105 4.105 20 H 0.038 0.962 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.159 0.841 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.123 0.877 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.385 -7.860 -10.354 13.433 hybrid contribution 0.449 0.746 1.884 2.075 sum 3.834 -7.114 -8.470 11.707 Atomic orbital electron populations 1.21869 0.97183 1.00140 0.99862 1.18539 0.91635 0.92181 0.81924 0.97565 1.21585 1.31916 1.13076 0.91083 0.91900 1.25773 0.95095 0.95633 1.02136 1.70032 1.37390 1.23917 1.24442 0.85436 0.78905 0.78230 0.78331 1.19194 1.19406 1.21244 1.48249 1.48597 1.13470 1.22313 1.21861 1.01274 0.80466 1.02638 1.21244 0.78114 0.86574 0.85328 1.90607 1.60309 1.19708 1.78306 1.23304 0.99644 0.99151 0.93581 1.23618 0.92715 1.01667 0.92140 1.66922 1.09263 1.19075 1.29914 1.23558 0.94405 0.93224 0.99264 0.96233 0.93371 0.91466 0.92642 0.91654 0.89178 0.91204 0.84122 0.92449 0.86248 0.85607 0.87654 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.97 71.98 0.65 -5.80 16 2 C 0.26 13.63 2.64 44.24 0.12 13.74 16 3 H 0.01 0.40 6.90 -2.39 -0.02 0.39 16 4 C -0.54 -29.24 7.99 25.60 0.20 -29.03 16 5 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 8 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 N -0.60 -25.17 2.75 -826.80 -2.28 -27.45 16 13 C 0.08 2.46 9.09 127.77 1.16 3.62 16 14 C 0.50 20.55 7.21 87.66 0.63 21.18 16 15 O -0.61 -31.05 15.22 -3.03 -0.05 -31.09 16 16 C -0.14 -3.83 2.95 -10.90 -0.03 -3.86 16 17 C 0.03 0.70 7.74 86.40 0.67 1.37 16 18 N -0.63 -14.05 8.53 -524.41 -4.47 -18.53 16 19 C 0.03 0.69 8.25 86.40 0.71 1.40 16 20 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 21 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 22 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.09 2.12 5.90 -2.38 -0.01 2.11 16 26 H 0.07 2.32 7.02 -2.39 -0.02 2.31 16 27 H 0.14 3.27 7.83 -2.38 -0.02 3.25 16 28 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 29 H 0.12 2.27 7.80 -2.39 -0.02 2.25 16 30 H 0.33 6.47 8.91 -89.69 -0.80 5.67 16 31 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.06 1.89 7.41 -2.39 -0.02 1.88 16 Total: -1.00 -68.14 262.50 0.35 -67.79 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.32 Total: 13.65 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 4.56 Total: 3.79 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -6.51 Total: -99.05 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.05 Total: -31.09 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -68.14 0.35 -67.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084412067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.470 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds