Wall clock time and date at job start Mon Mar 30 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99912 * 2 1 4 4 H 1.48494 * 109.46946 * 239.99762 * 3 2 1 5 5 H 1.48498 * 109.47376 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46919 * 120.00163 * 3 2 1 7 7 C 1.37873 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47461 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47230 * 179.97438 * 11 10 9 13 13 C 1.42898 * 114.00186 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.54267 * 110.03373 * 292.91285 * 14 13 12 16 16 C 1.54968 * 104.16137 * 217.13581 * 15 14 13 17 17 C 1.54884 * 102.77441 * 37.88396 * 16 15 14 18 18 C 1.53874 * 110.03593 * 175.69205 * 14 13 12 19 19 H 0.96998 * 119.99540 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47163 * 59.99946 * 9 7 2 21 21 H 1.09000 * 109.46916 * 300.00526 * 9 7 2 22 22 H 1.08998 * 109.47267 * 59.99654 * 10 9 7 23 23 H 1.09000 * 109.47194 * 299.99999 * 10 9 7 24 24 H 1.09001 * 109.47081 * 60.00049 * 11 10 9 25 25 H 1.08999 * 109.47384 * 299.99741 * 11 10 9 26 26 H 1.09002 * 109.47259 * 300.00293 * 13 12 11 27 27 H 1.09001 * 109.47074 * 60.00315 * 13 12 11 28 28 H 1.09004 * 110.01939 * 54.29674 * 14 13 12 29 29 H 1.09001 * 110.48609 * 335.77840 * 15 14 13 30 30 H 1.08999 * 110.49311 * 98.42344 * 15 14 13 31 31 H 1.08997 * 110.72048 * 279.57487 * 16 15 14 32 32 H 1.08993 * 110.92252 * 156.29196 * 16 15 14 33 33 H 1.09009 * 110.48779 * 203.40596 * 17 16 15 34 34 H 1.09001 * 110.59973 * 80.82109 * 17 16 15 35 35 H 1.09003 * 110.03243 * 238.56963 * 18 14 13 36 36 H 1.09004 * 110.03196 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4087 -6.0733 -0.0018 13 6 1.7941 -7.3634 -0.0018 14 6 2.8770 -8.4442 -0.0018 15 6 3.6497 -8.4181 -1.3368 16 6 3.9330 -9.9112 -1.6401 17 6 2.6340 -10.6093 -1.1666 18 6 2.2318 -9.8369 0.1067 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8719 -3.6044 0.8894 23 1 2.8718 -3.6044 -0.8905 24 1 0.8538 -5.0445 -0.8914 25 1 0.8532 -5.0451 0.8886 26 1 1.1743 -7.4706 0.8883 27 1 1.1737 -7.4702 -0.8916 28 1 3.5634 -8.2848 0.8299 29 1 3.0367 -7.9788 -2.1238 30 1 4.5834 -7.8666 -1.2266 31 1 4.7916 -10.2645 -1.0691 32 1 4.0893 -10.0687 -2.7072 33 1 2.8271 -11.6563 -0.9327 34 1 1.8556 -10.5262 -1.9251 35 1 2.6056 -10.3537 0.9906 36 1 1.1471 -9.7428 0.1598 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085487979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:58 Heat of formation + Delta-G solvation = -106.150038 kcal Electronic energy + Delta-G solvation = -13751.210572 eV Core-core repulsion = 11426.001884 eV Total energy + Delta-G solvation = -2325.208688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79587 -38.16180 -35.84477 -33.59350 -31.14028 -29.55494 -28.48788 -25.44223 -24.58494 -22.10572 -21.52606 -20.48471 -18.57860 -17.64475 -17.12174 -16.52299 -16.27955 -16.11114 -15.27792 -14.83199 -14.28670 -14.18971 -13.81116 -13.47683 -13.04018 -12.70316 -12.52947 -12.26191 -12.05171 -11.95696 -11.89301 -11.81911 -11.57963 -11.49508 -11.41785 -11.30241 -11.18219 -10.56812 -10.50895 -8.22020 -6.33463 1.40220 1.43742 1.51782 2.39735 2.73766 3.11169 3.70712 3.73765 3.87964 4.14249 4.25187 4.33581 4.44514 4.51729 4.57675 4.58891 4.68641 4.77709 4.83292 4.88700 4.93117 4.95949 5.07438 5.11258 5.15517 5.26268 5.36982 5.46701 5.47954 5.50466 5.67891 5.80928 6.18265 6.34110 6.81900 7.35737 8.89951 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.081112 B = 0.004218 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.120921 B = 6636.346706 C = 6824.737058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.073 3.927 12 O -0.405 6.405 13 C 0.061 3.939 14 C -0.092 4.092 15 C -0.119 4.119 16 C -0.123 4.123 17 C -0.122 4.122 18 C -0.115 4.115 19 H 0.265 0.735 20 H -0.003 1.003 21 H -0.003 1.003 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -19.957 -1.372 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.134 4.134 11 C -0.003 4.003 12 O -0.325 6.325 13 C -0.015 4.015 14 C -0.110 4.110 15 C -0.156 4.156 16 C -0.161 4.161 17 C -0.160 4.160 18 C -0.153 4.153 19 H 0.074 0.926 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.889 -19.826 -1.367 20.466 hybrid contribution -0.227 1.141 0.050 1.164 sum 4.662 -18.686 -1.317 19.303 Atomic orbital electron populations 1.70087 1.07778 1.27995 1.51397 1.25996 0.95838 1.03418 0.94508 0.85456 0.78264 0.77836 0.79232 1.19145 1.20574 1.19155 1.21633 0.93588 0.92286 1.51063 0.92247 1.18928 0.94239 0.92534 0.95294 1.21389 0.98602 0.92225 1.01177 1.22463 0.91722 0.86257 0.99864 1.87848 1.34637 1.14561 1.95491 1.22846 0.95835 0.82554 1.00305 1.21807 0.96482 0.93793 0.98967 1.22385 0.99640 0.97373 0.96223 1.22532 0.98175 0.93962 1.01404 1.22368 0.97254 0.99516 0.96832 1.22141 1.00728 0.93181 0.99251 0.92616 0.98485 0.98480 0.92820 0.92851 0.93506 0.93427 0.93008 0.93109 0.91029 0.92501 0.92535 0.90993 0.90972 0.90204 0.91542 0.90442 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.10 -4.31 5.52 30.59 0.17 -4.14 16 11 C 0.07 2.75 5.94 71.98 0.43 3.18 16 12 O -0.41 -14.11 10.18 -148.98 -1.52 -15.62 16 13 C 0.06 1.61 4.98 71.98 0.36 1.97 16 14 C -0.09 -2.03 3.19 -10.07 -0.03 -2.06 16 15 C -0.12 -2.60 6.22 31.70 0.20 -2.40 16 16 C -0.12 -2.01 6.91 31.91 0.22 -1.79 16 17 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 18 C -0.12 -1.89 6.46 31.32 0.20 -1.69 16 19 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 20 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 21 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 22 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.28 8.02 -2.39 -0.02 1.26 16 28 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.06 1.35 7.77 -2.39 -0.02 1.33 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.09 7.67 -2.38 -0.02 1.07 16 Total: -1.00 -64.30 293.41 4.40 -59.91 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.00 Total: 4.22 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 2.60 Total: -38.31 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -1.52 Total: -15.62 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.30 4.40 -59.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085487979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.243 kcal (2) G-P(sol) polarization free energy of solvation -64.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds