Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46947 * 2 1 4 4 C 1.52998 * 109.46755 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47206 * 174.99974 * 4 3 2 6 6 C 1.52997 * 109.47526 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47248 * 300.00178 * 6 5 4 8 8 O 1.42899 * 109.46897 * 299.99690 * 7 6 5 9 9 C 1.50695 * 109.47100 * 179.97438 * 7 6 5 10 10 H 1.08000 * 119.99754 * 244.17191 * 9 7 6 11 11 C 1.37876 * 120.00166 * 64.16829 * 9 7 6 12 12 N 1.31515 * 119.99808 * 6.18956 * 11 9 7 13 13 Si 1.86797 * 119.99967 * 185.91310 * 11 9 7 14 14 H 1.48499 * 109.47273 * 90.00215 * 13 11 9 15 15 H 1.48500 * 109.47097 * 210.00081 * 13 11 9 16 16 H 1.48502 * 109.47479 * 330.00056 * 13 11 9 17 17 C 1.52997 * 109.47003 * 59.99501 * 7 6 5 18 18 C 1.52997 * 109.47526 * 300.00328 * 17 7 6 19 19 H 1.09002 * 109.46515 * 60.00474 * 1 2 3 20 20 H 1.08997 * 109.46993 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47314 * 300.00283 * 1 2 3 22 22 H 1.08997 * 109.47314 * 239.99716 * 2 1 3 23 23 H 1.09002 * 109.46515 * 119.99526 * 2 1 3 24 24 H 1.09003 * 109.47007 * 60.00040 * 3 2 1 25 25 H 1.08993 * 109.47060 * 299.99347 * 3 2 1 26 26 H 1.08998 * 109.47494 * 54.99491 * 4 3 2 27 27 H 1.09003 * 109.46923 * 59.99696 * 5 4 3 28 28 H 1.08999 * 109.46981 * 300.00483 * 5 4 3 29 29 H 1.08997 * 109.47392 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.46591 * 60.00000 * 6 5 4 31 31 H 0.96697 * 114.00042 * 180.02562 * 8 7 6 32 32 H 0.97001 * 120.00128 * 2.27094 * 12 11 9 33 33 H 1.09003 * 109.46923 * 60.00429 * 17 7 6 34 34 H 1.08995 * 109.47268 * 180.02562 * 17 7 6 35 35 H 1.09003 * 109.47102 * 299.99991 * 18 17 7 36 36 H 1.08999 * 109.47267 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8794 -0.1251 6 6 5.6101 2.8795 -0.1238 7 6 6.1191 2.2703 1.1842 8 8 5.6419 3.0434 2.2871 9 6 7.6261 2.2698 1.1851 10 1 8.1657 1.3344 1.1994 11 6 8.3159 3.4635 1.1677 12 7 7.6643 4.6010 1.2731 13 14 10.1765 3.4646 1.0022 14 1 10.5456 3.5164 -0.4353 15 1 10.7347 4.6510 1.6995 16 1 10.7284 2.2276 1.6108 17 6 5.6090 0.8333 1.3099 18 6 4.0790 0.8333 1.3086 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6767 1.9564 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 3.9338 0.8529 -0.8408 27 1 3.7164 3.4690 0.7165 28 1 3.7172 3.3136 -1.0566 29 1 5.9735 3.9032 -0.2138 30 1 5.9741 2.2898 -0.9652 31 1 5.9268 2.7144 3.1506 32 1 6.7021 4.5993 1.3962 33 1 5.9731 0.2436 0.4685 34 1 5.9712 0.3994 2.2418 35 1 3.7149 1.4229 2.1500 36 1 3.7157 -0.1905 1.3977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = -114.235129 kcal Electronic energy + Delta-G solvation = -15062.444301 eV Core-core repulsion = 12736.885017 eV Total energy + Delta-G solvation = -2325.559284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33336 -37.28476 -34.44571 -34.22172 -31.62289 -30.85808 -27.62086 -25.39213 -23.67760 -22.54483 -21.29731 -20.47819 -19.38676 -17.15078 -16.16797 -15.90099 -15.63683 -15.13775 -15.02986 -14.52752 -14.45197 -13.84585 -13.63433 -13.26693 -13.04832 -12.65928 -12.57409 -12.41522 -12.25011 -12.01428 -11.92187 -11.89870 -11.57909 -11.40234 -11.30441 -11.09923 -10.56069 -10.43067 -9.83817 -8.40287 -6.32174 1.52373 1.59645 1.77491 2.59296 3.23592 3.74520 3.87482 3.99102 4.01919 4.23991 4.37815 4.48840 4.51495 4.60833 4.72066 4.75788 4.79816 4.84760 4.95417 4.97533 5.07402 5.13175 5.19410 5.24665 5.36101 5.38510 5.41224 5.51637 5.57898 5.66707 5.86798 6.02304 6.29746 6.75462 7.27114 7.63448 8.91574 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.068594 B = 0.007390 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.100181 B = 3787.794104 C = 3876.549839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.078 4.078 5 C -0.103 4.103 6 C -0.094 4.094 7 C 0.228 3.772 8 O -0.583 6.583 9 C -0.657 4.657 10 H 0.038 0.962 11 C -0.010 4.010 12 N -0.926 5.926 13 Si 1.107 2.893 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.125 4.125 18 C -0.099 4.099 19 H 0.055 0.945 20 H 0.061 0.939 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.358 0.642 32 H 0.283 0.717 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 -8.293 -2.164 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.144 4.144 4 C -0.096 4.096 5 C -0.140 4.140 6 C -0.133 4.133 7 C 0.190 3.810 8 O -0.388 6.388 9 C -0.694 4.694 10 H 0.057 0.943 11 C -0.213 4.213 12 N -0.564 5.564 13 Si 0.930 3.070 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.163 4.163 18 C -0.136 4.136 19 H 0.075 0.925 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.204 0.796 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.339 -6.966 -2.765 11.974 hybrid contribution -0.641 -1.040 0.592 1.357 sum -9.979 -8.006 -2.173 12.977 Atomic orbital electron populations 1.21761 0.95017 1.02020 1.01868 1.21568 0.96428 0.96052 1.02093 1.21590 0.93434 0.97619 1.01774 1.21094 0.95790 0.95090 0.97650 1.21494 0.94736 0.97378 1.00411 1.21390 0.95274 0.99653 0.96945 1.18942 0.90734 0.87295 0.84051 1.86327 1.77102 1.58606 1.16784 1.22832 0.93732 0.94559 1.58309 0.94331 1.26945 1.10042 0.92041 0.92303 1.70690 1.12822 1.28478 1.44428 0.83086 0.70705 0.75828 0.77369 1.20284 1.21214 1.19980 1.22001 0.96273 0.97802 1.00238 1.21488 0.94214 1.00393 0.97517 0.92542 0.91954 0.92846 0.91957 0.91974 0.92561 0.91751 0.91853 0.93421 0.92419 0.94999 0.93368 0.79616 0.90394 0.93137 0.93541 0.92868 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.92 16 2 C -0.12 -2.64 5.69 30.60 0.17 -2.47 16 3 C -0.11 -2.73 4.68 30.60 0.14 -2.59 16 4 C -0.08 -2.50 2.19 -10.79 -0.02 -2.52 16 5 C -0.10 -3.98 5.06 30.59 0.15 -3.83 16 6 C -0.09 -4.53 4.63 30.59 0.14 -4.39 16 7 C 0.23 11.29 0.53 -11.54 -0.01 11.28 16 8 O -0.58 -29.30 9.61 -148.98 -1.43 -30.73 16 9 C -0.66 -36.80 8.18 25.60 0.21 -36.59 16 10 H 0.04 2.17 7.75 -2.91 -0.02 2.14 16 11 C -0.01 -0.58 5.20 84.65 0.44 -0.14 16 12 N -0.93 -56.89 12.81 21.45 0.27 -56.62 16 13 Si 1.11 50.84 29.91 68.60 2.05 52.89 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 C -0.13 -5.16 4.85 30.59 0.15 -5.01 16 18 C -0.10 -3.33 4.81 30.59 0.15 -3.19 16 19 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 20 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.06 1.34 6.56 -2.39 -0.02 1.33 16 24 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 1.98 7.68 -2.39 -0.02 1.96 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.03 1.73 6.15 -2.39 -0.01 1.72 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.36 16.62 9.04 -74.06 -0.67 15.95 16 32 H 0.28 17.64 4.88 -92.71 -0.45 17.19 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 36 H 0.07 2.08 6.56 -2.39 -0.02 2.06 16 Total: -1.00 -63.11 275.26 3.82 -59.30 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.68 Total: 26.53 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 2.24 Total: -51.37 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.27 Total: -56.62 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.43 Total: -30.73 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -63.11 3.82 -59.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.940 kcal (2) G-P(sol) polarization free energy of solvation -63.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds