Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47162 * 2 1 4 4 C 1.53002 * 109.47375 * 120.00262 * 2 1 3 5 5 C 1.52998 * 109.47375 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46918 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47211 * 60.00005 * 6 5 4 8 8 O 1.42898 * 109.46976 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47128 * 60.00020 * 7 6 5 10 10 H 1.08003 * 119.99730 * 355.84224 * 9 7 6 11 11 C 1.37875 * 120.00217 * 175.84715 * 9 7 6 12 12 N 1.31515 * 119.99802 * 5.89957 * 11 9 7 13 13 Si 1.86798 * 120.00159 * 185.90063 * 11 9 7 14 14 H 1.48497 * 109.47053 * 84.99397 * 13 11 9 15 15 H 1.48503 * 109.46951 * 204.99598 * 13 11 9 16 16 H 1.48500 * 109.47112 * 324.99322 * 13 11 9 17 17 C 1.52998 * 109.47175 * 299.99838 * 7 6 5 18 18 C 1.52998 * 109.46918 * 59.99983 * 17 7 6 19 19 H 1.08994 * 109.47080 * 299.99831 * 1 2 3 20 20 H 1.08999 * 109.46854 * 60.00065 * 1 2 3 21 21 H 1.09006 * 109.46929 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46919 * 239.99881 * 2 1 3 23 23 H 1.09005 * 109.46984 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47183 * 299.99733 * 3 2 1 25 25 H 1.08997 * 109.47479 * 60.00136 * 3 2 1 26 26 H 1.09003 * 109.47011 * 300.00166 * 4 2 1 27 27 H 1.08996 * 109.47190 * 59.99374 * 5 4 2 28 28 H 1.09007 * 109.46919 * 299.99618 * 5 4 2 29 29 H 1.09005 * 109.46769 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47359 * 299.99969 * 6 5 4 31 31 H 0.96701 * 114.00170 * 184.15067 * 8 7 6 32 32 H 0.97001 * 120.00475 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.46910 * 179.97438 * 17 7 6 34 34 H 1.08997 * 109.46812 * 300.00283 * 17 7 6 35 35 H 1.08994 * 109.47359 * 60.00031 * 18 17 7 36 36 H 1.09005 * 109.46769 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0800 -1.4415 2.4991 7 6 3.5705 -2.8842 2.4993 8 8 4.0473 -3.5575 3.6661 9 6 4.0734 -3.5948 1.2691 10 1 4.6377 -3.0523 0.5250 11 6 3.8129 -4.9373 1.0935 12 7 3.0292 -5.5710 1.9384 13 14 4.5731 -5.8559 -0.3443 14 1 5.9361 -6.3144 0.0261 15 1 3.7303 -7.0310 -0.6822 16 1 4.6572 -4.9527 -1.5201 17 6 2.0405 -2.8848 2.4990 18 6 1.5306 -2.1640 1.2495 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -0.2075 2.1392 27 1 3.9330 0.3070 1.2497 28 1 3.9337 -1.2344 0.3595 29 1 5.1700 -1.4415 2.4990 30 1 3.7163 -0.9276 3.3888 31 1 3.8156 -4.4957 3.7011 32 1 2.8456 -6.5155 1.8147 33 1 1.6776 -3.9125 2.4987 34 1 1.6769 -2.3708 3.3887 35 1 1.8942 -2.6779 0.3597 36 1 0.4405 -2.1640 1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = -88.987055 kcal Electronic energy + Delta-G solvation = -15410.988866 eV Core-core repulsion = 13086.524421 eV Total energy + Delta-G solvation = -2324.464445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.61412 -35.77505 -32.60128 -31.97579 -29.84326 -27.68706 -26.75806 -24.98916 -21.71730 -21.30444 -19.21543 -18.77405 -16.44554 -15.20425 -14.98488 -14.10036 -13.94624 -13.37332 -13.25170 -12.87367 -12.52806 -12.08102 -11.85433 -11.51314 -11.43454 -11.21507 -10.96514 -10.83173 -10.59400 -10.46968 -10.37717 -10.13471 -10.03972 -9.66058 -9.47181 -9.19979 -8.70872 -8.49093 -7.85038 -6.07476 -4.16100 3.26963 3.33755 3.36315 4.37588 5.14970 5.20393 5.32715 5.33895 5.70917 5.86572 5.91490 5.97856 6.07035 6.13292 6.23903 6.25053 6.40715 6.49058 6.54179 6.63094 6.68611 6.73283 6.81728 6.88936 6.96540 7.03421 7.21719 7.43683 7.50311 7.63366 7.78617 8.11738 8.32668 8.84911 9.50979 9.65936 10.95042 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032161 B = 0.010977 C = 0.009979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.399405 B = 2550.177773 C = 2805.211583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.076 4.076 5 C -0.101 4.101 6 C -0.096 4.096 7 C 0.247 3.753 8 O -0.599 6.599 9 C -0.521 4.521 10 H 0.059 0.941 11 C 0.066 3.934 12 N -0.900 5.900 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.132 4.132 18 C -0.095 4.095 19 H 0.049 0.951 20 H 0.044 0.956 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.380 0.620 32 H 0.265 0.735 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.069 0.931 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 8.062 -3.015 9.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.095 4.095 5 C -0.138 4.138 6 C -0.134 4.134 7 C 0.208 3.792 8 O -0.408 6.408 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.171 4.171 18 C -0.132 4.132 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.230 0.770 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.233 8.483 -2.855 9.517 hybrid contribution 0.119 -1.161 -0.935 1.495 sum -3.114 7.322 -3.790 8.813 Atomic orbital electron populations 1.21874 0.96036 1.01827 1.00604 1.21162 0.95122 0.95592 0.99318 1.21885 1.01280 0.96499 1.00695 1.21168 0.95792 0.96636 0.95900 1.21500 0.94769 0.98127 0.99449 1.21346 0.99545 0.96553 0.95943 1.18630 0.88923 0.87715 0.83913 1.86077 1.81234 1.28147 1.45337 1.21742 1.33728 0.94407 1.06025 0.92238 1.24982 0.94279 0.97702 0.96430 1.69604 1.36341 1.10432 1.37809 0.86605 0.79343 0.79344 0.82666 1.20584 1.21308 1.19987 1.22088 0.99366 1.01491 0.94110 1.21417 0.97337 0.93808 1.00663 0.93219 0.93661 0.92209 0.91414 0.92409 0.93624 0.93190 0.92727 0.93701 0.91257 0.93159 0.94332 0.76960 0.92520 0.89330 0.96234 0.91185 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 2 C -0.09 -1.42 2.51 -90.62 -0.23 -1.64 16 3 C -0.15 -1.92 8.84 37.15 0.33 -1.59 16 4 C -0.08 -1.37 1.77 -90.62 -0.16 -1.54 16 5 C -0.10 -1.93 4.62 -26.73 -0.12 -2.06 16 6 C -0.10 -2.14 5.07 -26.73 -0.14 -2.27 16 7 C 0.25 6.24 0.85 -91.77 -0.08 6.16 16 8 O -0.60 -16.25 12.97 -35.23 -0.46 -16.71 16 9 C -0.52 -13.81 6.35 -34.44 -0.22 -14.03 16 10 H 0.06 1.58 6.57 -52.48 -0.34 1.23 16 11 C 0.07 1.76 5.19 -17.82 -0.09 1.67 16 12 N -0.90 -24.20 9.71 55.43 0.54 -23.67 16 13 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C -0.13 -3.15 4.92 -26.73 -0.13 -3.28 16 18 C -0.09 -1.96 4.63 -26.73 -0.12 -2.08 16 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.86 6.43 -51.93 -0.33 0.52 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.75 6.43 -51.93 -0.33 0.42 16 28 H 0.07 1.42 6.54 -51.93 -0.34 1.08 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.38 10.43 6.97 45.56 0.32 10.74 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.09 2.31 6.18 -51.93 -0.32 1.99 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.58 7.22 -51.93 -0.37 1.21 16 36 H 0.04 0.71 6.43 -51.93 -0.33 0.38 16 LS Contribution 267.92 15.07 4.04 4.04 Total: -1.00 -26.90 267.92 -6.88 -33.77 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.34 Total: 9.06 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -0.63 Total: -22.33 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.54 Total: -23.67 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.46 Total: -16.71 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.90 -6.88 -33.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.215 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds