Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47162 * 2 1 4 4 C 1.53002 * 109.47375 * 120.00262 * 2 1 3 5 5 C 1.52998 * 109.47375 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46918 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47211 * 60.00005 * 6 5 4 8 8 O 1.42898 * 109.46976 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47128 * 60.00020 * 7 6 5 10 10 H 1.08003 * 119.99730 * 355.84224 * 9 7 6 11 11 C 1.37875 * 120.00217 * 175.84715 * 9 7 6 12 12 N 1.31515 * 119.99802 * 5.89957 * 11 9 7 13 13 Si 1.86798 * 120.00159 * 185.90063 * 11 9 7 14 14 H 1.48497 * 109.47053 * 84.99397 * 13 11 9 15 15 H 1.48503 * 109.46951 * 204.99598 * 13 11 9 16 16 H 1.48500 * 109.47112 * 324.99322 * 13 11 9 17 17 C 1.52998 * 109.47175 * 299.99838 * 7 6 5 18 18 C 1.52998 * 109.46918 * 59.99983 * 17 7 6 19 19 H 1.08994 * 109.47080 * 299.99831 * 1 2 3 20 20 H 1.08999 * 109.46854 * 60.00065 * 1 2 3 21 21 H 1.09006 * 109.46929 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46919 * 239.99881 * 2 1 3 23 23 H 1.09005 * 109.46984 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47183 * 299.99733 * 3 2 1 25 25 H 1.08997 * 109.47479 * 60.00136 * 3 2 1 26 26 H 1.09003 * 109.47011 * 300.00166 * 4 2 1 27 27 H 1.08996 * 109.47190 * 59.99374 * 5 4 2 28 28 H 1.09007 * 109.46919 * 299.99618 * 5 4 2 29 29 H 1.09005 * 109.46769 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47359 * 299.99969 * 6 5 4 31 31 H 0.96701 * 114.00170 * 184.15067 * 8 7 6 32 32 H 0.97001 * 120.00475 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.46910 * 179.97438 * 17 7 6 34 34 H 1.08997 * 109.46812 * 300.00283 * 17 7 6 35 35 H 1.08994 * 109.47359 * 60.00031 * 18 17 7 36 36 H 1.09005 * 109.46769 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0800 -1.4415 2.4991 7 6 3.5705 -2.8842 2.4993 8 8 4.0473 -3.5575 3.6661 9 6 4.0734 -3.5948 1.2691 10 1 4.6377 -3.0523 0.5250 11 6 3.8129 -4.9373 1.0935 12 7 3.0292 -5.5710 1.9384 13 14 4.5731 -5.8559 -0.3443 14 1 5.9361 -6.3144 0.0261 15 1 3.7303 -7.0310 -0.6822 16 1 4.6572 -4.9527 -1.5201 17 6 2.0405 -2.8848 2.4990 18 6 1.5306 -2.1640 1.2495 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -0.2075 2.1392 27 1 3.9330 0.3070 1.2497 28 1 3.9337 -1.2344 0.3595 29 1 5.1700 -1.4415 2.4990 30 1 3.7163 -0.9276 3.3888 31 1 3.8156 -4.4957 3.7011 32 1 2.8456 -6.5155 1.8147 33 1 1.6776 -3.9125 2.4987 34 1 1.6769 -2.3708 3.3887 35 1 1.8942 -2.6779 0.3597 36 1 0.4405 -2.1640 1.2495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = -104.705052 kcal Electronic energy + Delta-G solvation = -15411.670450 eV Core-core repulsion = 13086.524421 eV Total energy + Delta-G solvation = -2325.146028 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27828 -37.45271 -34.27776 -34.01082 -31.53701 -29.39261 -27.87079 -26.94335 -23.27450 -22.99801 -20.68273 -20.51686 -18.43576 -17.05647 -16.86408 -15.76004 -15.30067 -14.99424 -14.84277 -14.49309 -14.13506 -13.68033 -13.31337 -13.07949 -12.93775 -12.86491 -12.64837 -12.53175 -12.32759 -12.09115 -11.97205 -11.75340 -11.58711 -11.33361 -11.13229 -10.80442 -10.56965 -10.46057 -9.85167 -8.10199 -6.25273 1.39763 1.42483 1.49913 2.41477 3.10239 3.85295 3.99706 4.10940 4.17211 4.38127 4.59064 4.70743 4.72438 4.82878 4.83355 4.89269 4.95864 5.03898 5.12750 5.16237 5.18220 5.21748 5.22985 5.33584 5.48192 5.55041 5.59126 5.67663 5.69477 5.76711 5.89648 6.14661 6.30587 6.78986 7.43496 7.52325 8.90591 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032161 B = 0.010977 C = 0.009979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.399405 B = 2550.177773 C = 2805.211583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.071 4.071 5 C -0.094 4.094 6 C -0.096 4.096 7 C 0.231 3.769 8 O -0.611 6.611 9 C -0.533 4.533 10 H 0.054 0.946 11 C 0.025 3.975 12 N -0.917 5.917 13 Si 0.949 3.051 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.128 4.128 18 C -0.087 4.087 19 H 0.057 0.943 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.374 0.626 32 H 0.265 0.735 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.045 0.955 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 9.599 -4.068 11.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.089 4.089 5 C -0.131 4.131 6 C -0.133 4.133 7 C 0.192 3.808 8 O -0.421 6.421 9 C -0.572 4.572 10 H 0.073 0.927 11 C -0.173 4.173 12 N -0.558 5.558 13 Si 0.775 3.225 14 H -0.206 1.206 15 H -0.209 1.209 16 H -0.195 1.195 17 C -0.166 4.166 18 C -0.125 4.125 19 H 0.076 0.924 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.223 0.777 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.636 10.033 -3.909 11.365 hybrid contribution 0.246 -1.659 -0.560 1.769 sum -3.391 8.373 -4.469 10.079 Atomic orbital electron populations 1.21852 0.94771 1.01516 1.02007 1.21114 0.96196 0.96549 0.97073 1.21850 1.01152 0.94950 1.02046 1.21113 0.94865 0.95040 0.97910 1.21455 0.95634 0.99083 0.96933 1.21368 0.99031 0.95056 0.97891 1.18977 0.89898 0.89053 0.82896 1.86074 1.81661 1.27823 1.46498 1.21891 1.33925 0.94910 1.06434 0.92750 1.25624 0.94638 0.98435 0.98647 1.69710 1.36774 1.10521 1.38836 0.85716 0.78353 0.78232 0.80176 1.20645 1.20943 1.19487 1.21974 0.98508 1.00306 0.95795 1.21317 0.98195 0.95170 0.97774 0.92434 0.91692 0.93383 0.92380 0.92592 0.91798 0.92385 0.92059 0.90684 0.92878 0.94073 0.93741 0.77664 0.92514 0.92180 0.96056 0.93576 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.84 71.98 0.64 -2.88 16 2 C -0.09 -2.51 2.51 -10.80 -0.03 -2.54 16 3 C -0.14 -3.23 8.84 71.98 0.64 -2.59 16 4 C -0.07 -2.41 1.77 -10.79 -0.02 -2.43 16 5 C -0.09 -3.44 4.62 30.59 0.14 -3.30 16 6 C -0.10 -4.20 5.07 30.59 0.16 -4.04 16 7 C 0.23 11.73 0.85 -11.54 -0.01 11.72 16 8 O -0.61 -33.85 12.97 -148.98 -1.93 -35.78 16 9 C -0.53 -28.57 6.35 25.60 0.16 -28.41 16 10 H 0.05 2.91 6.57 -2.91 -0.02 2.89 16 11 C 0.03 1.34 5.19 84.65 0.44 1.78 16 12 N -0.92 -50.04 9.71 21.45 0.21 -49.83 16 13 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 C -0.13 -6.11 4.92 30.59 0.15 -5.96 16 18 C -0.09 -3.55 4.63 30.59 0.14 -3.40 16 19 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 20 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.05 1.27 6.43 -2.38 -0.02 1.25 16 22 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.06 1.28 6.43 -2.38 -0.02 1.26 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.31 6.43 -2.39 -0.02 2.29 16 28 H 0.05 2.12 6.54 -2.38 -0.02 2.11 16 29 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.37 21.13 6.97 -74.06 -0.52 20.62 16 32 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.06 3.21 6.18 -2.39 -0.01 3.19 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 2.09 7.22 -2.39 -0.02 2.07 16 36 H 0.05 1.96 6.43 -2.38 -0.02 1.95 16 Total: -1.00 -56.96 267.92 3.24 -53.72 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.53 Total: 29.02 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 2.41 Total: -42.06 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.21 Total: -49.83 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.93 Total: -35.78 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -56.96 3.24 -53.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.985 kcal (2) G-P(sol) polarization free energy of solvation -56.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds