Wall clock time and date at job start Mon Mar 30 2020 03:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53225 * 1 3 3 C 1.53169 * 108.28301 * 2 1 4 4 C 1.50258 * 108.75507 * 241.70134 * 2 1 3 5 5 C 1.54048 * 109.42705 * 199.81756 * 4 2 1 6 6 C 1.45484 * 112.62110 * 98.47186 * 5 4 2 7 7 C 1.54151 * 112.83965 * 277.56319 * 6 5 4 8 8 O 1.42806 * 109.92211 * 294.81517 * 7 6 5 9 9 C 1.50960 * 109.32505 * 174.87961 * 7 6 5 10 10 H 1.07997 * 120.00112 * 357.33287 * 9 7 6 11 11 C 1.37877 * 119.99934 * 177.32945 * 9 7 6 12 12 N 1.31518 * 119.99687 * 354.17840 * 11 9 7 13 13 Si 1.86791 * 120.00075 * 174.17246 * 11 9 7 14 14 H 1.48497 * 109.47292 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.47251 * 300.00459 * 13 11 9 16 16 H 1.48500 * 109.47323 * 60.00400 * 13 11 9 17 17 C 1.50319 * 108.81784 * 55.52222 * 7 6 5 18 18 C 1.53797 * 113.43634 * 286.06949 * 17 7 6 19 19 H 1.09003 * 109.47798 * 301.84881 * 1 2 3 20 20 H 1.09005 * 109.47649 * 61.84995 * 1 2 3 21 21 H 1.08997 * 109.47119 * 181.84545 * 1 2 3 22 22 H 1.08997 * 109.46839 * 178.09224 * 3 2 1 23 23 H 1.08994 * 109.47489 * 298.09487 * 3 2 1 24 24 H 1.09005 * 109.47010 * 58.09617 * 3 2 1 25 25 H 1.09129 * 109.60830 * 320.07748 * 4 2 1 26 26 H 1.09186 * 109.52904 * 79.74099 * 4 2 1 27 27 H 1.09398 * 108.50001 * 218.41401 * 5 4 2 28 28 H 1.08736 * 109.85547 * 336.56496 * 5 4 2 29 29 H 1.09111 * 108.77930 * 156.70979 * 6 5 4 30 30 H 1.09070 * 108.87108 * 38.54959 * 6 5 4 31 31 H 0.96703 * 114.00066 * 295.49334 * 8 7 6 32 32 H 0.96999 * 120.00297 * 359.92094 * 12 11 9 33 33 H 1.09076 * 108.71276 * 47.85828 * 17 7 6 34 34 H 1.09317 * 108.53944 * 165.21120 * 17 7 6 35 35 H 1.09416 * 108.44535 * 215.42694 * 18 17 7 36 36 H 1.08897 * 109.52300 * 333.05584 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5322 0.0000 0.0000 3 6 2.0128 1.4544 0.0000 4 6 2.0154 -0.6745 -1.2528 5 6 3.4743 -1.1298 -1.0595 6 6 3.5792 -2.5377 -0.7081 7 6 3.3599 -2.7970 0.7955 8 8 4.4072 -2.1887 1.5521 9 6 3.3602 -4.2848 1.0512 10 1 3.4583 -4.9745 0.2259 11 6 3.2354 -4.7632 2.3383 12 7 3.2313 -3.9267 3.3531 13 14 3.0721 -6.5992 2.6406 14 1 2.9526 -6.8521 4.0989 15 1 1.8606 -7.1088 1.9493 16 1 4.2727 -7.2964 2.1136 17 6 2.0300 -2.2232 1.1976 18 6 2.0276 -0.6877 1.2853 19 1 -0.3635 0.5423 0.8729 20 1 -0.3634 0.4848 -0.9061 21 1 -0.3633 -1.0271 0.0331 22 1 3.1019 1.4771 0.0342 23 1 1.6673 1.9512 -0.9065 24 1 1.6110 1.9697 0.8725 25 1 1.3866 -1.5399 -1.4685 26 1 1.9592 0.0253 -2.0890 27 1 4.0156 -0.9674 -1.9962 28 1 3.9481 -0.5322 -0.2845 29 1 4.5716 -2.8961 -0.9859 30 1 2.8356 -3.0992 -1.2750 31 1 5.2823 -2.5650 1.3857 32 1 3.3172 -2.9733 3.1962 33 1 1.2778 -2.5438 0.4757 34 1 1.7573 -2.6295 2.1751 35 1 1.3730 -0.3890 2.1095 36 1 3.0331 -0.3344 1.5094 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:59 Heat of formation + Delta-G solvation = -83.435767 kcal Electronic energy + Delta-G solvation = -15630.859358 eV Core-core repulsion = 13306.635635 eV Total energy + Delta-G solvation = -2324.223723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.20637 -36.02574 -32.59832 -32.09678 -30.18981 -27.11944 -26.93030 -25.04938 -23.12746 -21.30651 -19.17466 -17.68542 -17.34955 -15.34655 -14.70559 -14.51416 -13.93963 -13.69296 -13.23816 -12.70329 -12.48485 -12.33153 -11.91467 -11.67533 -11.44513 -11.26865 -10.93101 -10.88305 -10.79440 -10.44083 -10.13564 -10.06405 -9.99712 -9.78087 -9.61107 -9.41177 -8.74014 -8.35533 -7.84794 -6.19847 -4.09118 3.44551 3.45891 3.64897 4.55767 5.12039 5.21281 5.25360 5.39725 5.64080 5.74466 5.80723 5.89788 5.92574 6.04616 6.10777 6.21523 6.25424 6.30428 6.34984 6.42462 6.45550 6.61013 6.69713 6.79947 6.92840 6.96371 6.98551 7.15919 7.32789 7.46674 7.84032 8.14866 8.45029 8.97267 9.23537 9.75640 11.14811 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.044833 B = 0.010024 C = 0.009601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.389531 B = 2792.492876 C = 2915.652129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.100 4.100 5 C -0.111 4.111 6 C -0.131 4.131 7 C 0.244 3.756 8 O -0.577 6.577 9 C -0.642 4.642 10 H 0.046 0.954 11 C 0.036 3.964 12 N -0.897 5.897 13 Si 1.059 2.941 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.289 1.289 17 C -0.092 4.092 18 C -0.101 4.101 19 H 0.049 0.951 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.355 0.645 32 H 0.293 0.707 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 6.618 -6.639 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.138 4.138 5 C -0.148 4.148 6 C -0.169 4.169 7 C 0.205 3.795 8 O -0.381 6.381 9 C -0.680 4.680 10 H 0.065 0.935 11 C -0.173 4.173 12 N -0.534 5.534 13 Si 0.888 3.112 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.216 1.216 17 C -0.130 4.130 18 C -0.139 4.139 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.200 0.800 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.085 5.874 -5.219 8.441 hybrid contribution 0.556 0.663 -1.578 1.800 sum -2.528 6.538 -6.796 9.763 Atomic orbital electron populations 1.22037 0.95737 1.01576 1.00544 1.20346 0.94755 0.94938 0.96210 1.22000 1.01118 0.95910 1.00589 1.21402 0.96811 0.99558 0.95995 1.20315 0.95769 0.98608 1.00103 1.21012 1.00402 0.94818 1.00650 1.18539 0.84772 0.91350 0.84860 1.86302 1.18408 1.64099 1.69299 1.22453 1.58402 0.91554 0.95586 0.93527 1.25643 0.93123 1.06216 0.92323 1.70619 1.42780 1.06890 1.33118 0.83711 0.76461 0.74944 0.76058 1.20851 1.21572 1.21603 1.21150 0.97479 0.92080 1.02301 1.21879 1.01005 0.96801 0.94170 0.93227 0.93585 0.92646 0.92755 0.93488 0.93273 0.92213 0.93156 0.94663 0.91320 0.93944 0.93138 0.79957 0.89222 0.93292 0.91448 0.94171 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.04 37.27 0.30 -1.79 16 2 C -0.06 -1.02 0.48 -155.17 -0.07 -1.09 16 3 C -0.14 -1.98 8.05 37.24 0.30 -1.68 16 4 C -0.10 -1.64 4.30 -27.55 -0.12 -1.76 16 5 C -0.11 -2.00 4.94 -29.73 -0.15 -2.14 16 6 C -0.13 -2.75 4.26 -29.67 -0.13 -2.88 16 7 C 0.24 5.91 0.53 -92.38 -0.05 5.86 16 8 O -0.58 -14.13 9.35 -35.23 -0.33 -14.46 16 9 C -0.64 -17.67 8.13 -34.31 -0.28 -17.95 16 10 H 0.05 1.29 7.75 -52.49 -0.41 0.89 16 11 C 0.04 1.01 5.06 -17.82 -0.09 0.92 16 12 N -0.90 -26.73 12.71 55.43 0.70 -26.03 16 13 Si 1.06 25.02 29.91 -169.99 -5.08 19.93 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.09 -2.15 3.94 -27.65 -0.11 -2.26 16 18 C -0.10 -2.00 4.02 -25.82 -0.10 -2.10 16 19 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.86 7.68 -51.93 -0.40 0.46 16 22 H 0.05 0.79 7.43 -51.93 -0.39 0.41 16 23 H 0.05 0.59 8.00 -51.93 -0.42 0.18 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.02 6.80 -51.86 -0.35 0.67 16 26 H 0.05 0.73 7.82 -51.82 -0.41 0.32 16 27 H 0.03 0.57 8.17 -51.70 -0.42 0.15 16 28 H 0.07 1.31 5.30 -52.08 -0.28 1.03 16 29 H 0.04 0.88 8.15 -51.87 -0.42 0.46 16 30 H 0.05 1.07 7.60 -51.89 -0.39 0.68 16 31 H 0.36 8.11 9.02 45.56 0.41 8.52 16 32 H 0.29 8.78 5.04 -40.82 -0.21 8.57 16 33 H 0.05 1.12 6.63 -51.89 -0.34 0.77 16 34 H 0.07 1.80 5.87 -51.75 -0.30 1.49 16 35 H 0.04 0.78 7.90 -51.69 -0.41 0.37 16 36 H 0.07 1.44 5.83 -51.99 -0.30 1.14 16 LS Contribution 264.38 15.07 3.98 3.98 Total: -1.00 -29.01 264.38 -6.32 -35.33 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.09 Total: 8.12 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -0.50 Total: -26.89 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.70 Total: -26.03 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.33 Total: -14.46 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.01 -6.32 -35.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.104 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds