Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53225 * 1 3 3 C 1.53169 * 108.28301 * 2 1 4 4 C 1.50258 * 108.75507 * 241.70134 * 2 1 3 5 5 C 1.54048 * 109.42705 * 199.81756 * 4 2 1 6 6 C 1.45484 * 112.62110 * 98.47186 * 5 4 2 7 7 C 1.54151 * 112.83965 * 277.56319 * 6 5 4 8 8 O 1.42806 * 109.92211 * 294.81517 * 7 6 5 9 9 C 1.50960 * 109.32505 * 174.87961 * 7 6 5 10 10 H 1.07997 * 120.00112 * 357.33287 * 9 7 6 11 11 C 1.37877 * 119.99934 * 177.32945 * 9 7 6 12 12 N 1.31518 * 119.99687 * 354.17840 * 11 9 7 13 13 Si 1.86791 * 120.00075 * 174.17246 * 11 9 7 14 14 H 1.48497 * 109.47292 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.47251 * 300.00459 * 13 11 9 16 16 H 1.48500 * 109.47323 * 60.00400 * 13 11 9 17 17 C 1.50319 * 108.81784 * 55.52222 * 7 6 5 18 18 C 1.53797 * 113.43634 * 286.06949 * 17 7 6 19 19 H 1.09003 * 109.47798 * 301.84881 * 1 2 3 20 20 H 1.09005 * 109.47649 * 61.84995 * 1 2 3 21 21 H 1.08997 * 109.47119 * 181.84545 * 1 2 3 22 22 H 1.08997 * 109.46839 * 178.09224 * 3 2 1 23 23 H 1.08994 * 109.47489 * 298.09487 * 3 2 1 24 24 H 1.09005 * 109.47010 * 58.09617 * 3 2 1 25 25 H 1.09129 * 109.60830 * 320.07748 * 4 2 1 26 26 H 1.09186 * 109.52904 * 79.74099 * 4 2 1 27 27 H 1.09398 * 108.50001 * 218.41401 * 5 4 2 28 28 H 1.08736 * 109.85547 * 336.56496 * 5 4 2 29 29 H 1.09111 * 108.77930 * 156.70979 * 6 5 4 30 30 H 1.09070 * 108.87108 * 38.54959 * 6 5 4 31 31 H 0.96703 * 114.00066 * 295.49334 * 8 7 6 32 32 H 0.96999 * 120.00297 * 359.92094 * 12 11 9 33 33 H 1.09076 * 108.71276 * 47.85828 * 17 7 6 34 34 H 1.09317 * 108.53944 * 165.21120 * 17 7 6 35 35 H 1.09416 * 108.44535 * 215.42694 * 18 17 7 36 36 H 1.08897 * 109.52300 * 333.05584 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5322 0.0000 0.0000 3 6 2.0128 1.4544 0.0000 4 6 2.0154 -0.6745 -1.2528 5 6 3.4743 -1.1298 -1.0595 6 6 3.5792 -2.5377 -0.7081 7 6 3.3599 -2.7970 0.7955 8 8 4.4072 -2.1887 1.5521 9 6 3.3602 -4.2848 1.0512 10 1 3.4583 -4.9745 0.2259 11 6 3.2354 -4.7632 2.3383 12 7 3.2313 -3.9267 3.3531 13 14 3.0721 -6.5992 2.6406 14 1 2.9526 -6.8521 4.0989 15 1 1.8606 -7.1088 1.9493 16 1 4.2727 -7.2964 2.1136 17 6 2.0300 -2.2232 1.1976 18 6 2.0276 -0.6877 1.2853 19 1 -0.3635 0.5423 0.8729 20 1 -0.3634 0.4848 -0.9061 21 1 -0.3633 -1.0271 0.0331 22 1 3.1019 1.4771 0.0342 23 1 1.6673 1.9512 -0.9065 24 1 1.6110 1.9697 0.8725 25 1 1.3866 -1.5399 -1.4685 26 1 1.9592 0.0253 -2.0890 27 1 4.0156 -0.9674 -1.9962 28 1 3.9481 -0.5322 -0.2845 29 1 4.5716 -2.8961 -0.9859 30 1 2.8356 -3.0992 -1.2750 31 1 5.2823 -2.5650 1.3857 32 1 3.3172 -2.9733 3.1962 33 1 1.2778 -2.5438 0.4757 34 1 1.7573 -2.6295 2.1751 35 1 1.3730 -0.3890 2.1095 36 1 3.0331 -0.3344 1.5094 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = -101.255493 kcal Electronic energy + Delta-G solvation = -15631.632079 eV Core-core repulsion = 13306.635635 eV Total energy + Delta-G solvation = -2324.996444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80161 -37.72818 -34.38288 -34.00498 -31.96898 -28.77372 -28.08381 -26.75632 -24.98249 -22.86489 -20.98613 -19.49642 -19.03540 -17.11588 -16.30991 -16.09419 -15.61614 -15.46981 -14.70421 -14.50798 -14.06460 -13.76677 -13.41697 -13.33985 -12.89727 -12.70790 -12.64074 -12.59515 -12.25688 -12.04326 -11.97793 -11.90214 -11.74322 -11.17971 -11.10896 -10.94768 -10.59873 -10.45685 -9.86532 -8.41522 -6.33131 1.51888 1.58428 1.77987 2.58570 3.22942 3.72495 3.87745 3.94206 4.00835 4.23444 4.33291 4.49593 4.58236 4.60678 4.75118 4.81376 4.86457 4.88874 4.95503 5.02215 5.11770 5.20725 5.26936 5.27817 5.36993 5.47693 5.52914 5.57686 5.64493 5.72409 5.94270 6.02154 6.30006 6.73729 7.28056 7.61514 8.90454 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.044833 B = 0.010024 C = 0.009601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.389531 B = 2792.492876 C = 2915.652129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.098 4.098 5 C -0.109 4.109 6 C -0.121 4.121 7 C 0.233 3.767 8 O -0.583 6.583 9 C -0.655 4.655 10 H 0.039 0.961 11 C -0.011 4.011 12 N -0.924 5.924 13 Si 1.103 2.897 14 H -0.286 1.286 15 H -0.275 1.275 16 H -0.273 1.273 17 C -0.083 4.083 18 C -0.092 4.092 19 H 0.054 0.946 20 H 0.071 0.929 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.359 0.641 32 H 0.282 0.718 33 H 0.047 0.953 34 H 0.025 0.975 35 H 0.037 0.963 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 7.470 -8.262 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.135 4.135 5 C -0.146 4.146 6 C -0.159 4.159 7 C 0.194 3.806 8 O -0.388 6.388 9 C -0.693 4.693 10 H 0.057 0.943 11 C -0.214 4.214 12 N -0.561 5.561 13 Si 0.927 3.073 14 H -0.212 1.212 15 H -0.201 1.201 16 H -0.198 1.198 17 C -0.121 4.121 18 C -0.129 4.129 19 H 0.073 0.927 20 H 0.090 0.910 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.205 0.795 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.552 6.735 -6.863 10.250 hybrid contribution 0.727 0.389 -1.084 1.362 sum -2.825 7.124 -7.947 11.040 Atomic orbital electron populations 1.22009 0.94348 1.01115 1.02180 1.20315 0.95884 0.95901 0.94049 1.21952 1.00763 0.94280 1.02173 1.21410 0.95149 0.99944 0.97002 1.20260 0.97465 0.96065 1.00823 1.20881 1.00014 0.97080 0.97888 1.18642 0.85041 0.89831 0.87073 1.86288 1.18744 1.63970 1.69798 1.22854 1.57618 0.93518 0.95331 0.94307 1.26932 0.92371 1.09615 0.92470 1.70723 1.45052 1.06542 1.33814 0.83127 0.77564 0.70767 0.75880 1.21203 1.20098 1.19847 1.21003 0.96836 0.94629 0.99669 1.21773 1.00222 0.94278 0.96652 0.92684 0.90971 0.94119 0.93364 0.90920 0.92798 0.93161 0.89984 0.92243 0.92373 0.94226 0.93646 0.79522 0.90496 0.93406 0.95597 0.94451 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.04 72.06 0.58 -3.17 16 2 C -0.06 -1.86 0.48 -52.61 -0.03 -1.89 16 3 C -0.13 -3.40 8.05 72.04 0.58 -2.82 16 4 C -0.10 -2.92 4.30 30.06 0.13 -2.79 16 5 C -0.11 -3.70 4.94 28.65 0.14 -3.56 16 6 C -0.12 -5.00 4.26 28.69 0.12 -4.88 16 7 C 0.23 11.46 0.53 -11.93 -0.01 11.45 16 8 O -0.58 -29.19 9.35 -148.98 -1.39 -30.59 16 9 C -0.66 -36.61 8.13 25.68 0.21 -36.40 16 10 H 0.04 2.17 7.75 -2.91 -0.02 2.15 16 11 C -0.01 -0.61 5.06 84.65 0.43 -0.19 16 12 N -0.92 -56.46 12.71 21.45 0.27 -56.19 16 13 Si 1.10 50.65 29.91 68.60 2.05 52.70 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 C -0.08 -3.97 3.94 30.00 0.12 -3.85 16 18 C -0.09 -3.62 4.02 31.19 0.13 -3.49 16 19 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 20 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 21 H 0.04 1.20 7.68 -2.39 -0.02 1.18 16 22 H 0.05 1.28 7.43 -2.39 -0.02 1.26 16 23 H 0.07 1.49 8.00 -2.39 -0.02 1.47 16 24 H 0.05 1.30 8.14 -2.38 -0.02 1.29 16 25 H 0.05 1.60 6.80 -2.32 -0.02 1.59 16 26 H 0.08 1.98 7.82 -2.29 -0.02 1.96 16 27 H 0.06 1.75 8.17 -2.18 -0.02 1.73 16 28 H 0.06 2.13 5.30 -2.53 -0.01 2.11 16 29 H 0.04 1.62 8.15 -2.33 -0.02 1.60 16 30 H 0.04 1.90 7.60 -2.35 -0.02 1.88 16 31 H 0.36 16.79 9.02 -74.06 -0.67 16.12 16 32 H 0.28 17.49 5.04 -92.71 -0.47 17.03 16 33 H 0.05 2.21 6.63 -2.35 -0.02 2.20 16 34 H 0.03 1.42 5.87 -2.22 -0.01 1.40 16 35 H 0.04 1.45 7.90 -2.17 -0.02 1.44 16 36 H 0.05 2.20 5.83 -2.44 -0.01 2.18 16 Total: -1.00 -62.89 264.38 4.02 -58.87 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.69 Total: 26.79 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 2.40 Total: -51.59 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.27 Total: -56.19 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.39 Total: -30.59 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Total: -62.89 4.02 -58.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.385 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds