Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00262 * 2 1 4 4 C 1.50706 * 109.47195 * 270.00289 * 3 2 1 5 5 H 1.07996 * 119.99442 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99627 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00403 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99659 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47121 * 59.99839 * 8 6 4 10 10 H 1.48503 * 109.47212 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46945 * 300.00023 * 8 6 4 12 12 C 1.34768 * 120.00121 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00474 * 186.07161 * 12 2 1 14 14 C 1.50707 * 120.00160 * 6.07181 * 12 2 1 15 15 N 1.46903 * 112.84722 * 45.43157 * 14 12 2 16 16 C 1.53777 * 113.61751 * 176.62846 * 14 12 2 17 17 C 1.54046 * 86.98841 * 140.02063 * 16 14 12 18 18 C 1.53778 * 113.61413 * 274.23799 * 14 12 2 19 19 H 1.08995 * 109.46962 * 264.17939 * 1 2 3 20 20 H 1.09005 * 109.46835 * 24.18033 * 1 2 3 21 21 H 1.08996 * 109.46931 * 144.17956 * 1 2 3 22 22 H 1.09007 * 109.46827 * 29.99799 * 3 2 1 23 23 H 1.08999 * 109.47056 * 150.00148 * 3 2 1 24 24 H 0.97000 * 120.00076 * 180.02562 * 7 6 4 25 25 H 1.00898 * 110.99885 * 64.72555 * 15 14 12 26 26 H 1.00894 * 111.00080 * 188.68352 * 15 14 12 27 27 H 1.09007 * 113.60962 * 254.61472 * 16 14 12 28 28 H 1.08996 * 113.61732 * 25.51544 * 16 14 12 29 29 H 1.08999 * 113.62174 * 220.02204 * 17 16 14 30 30 H 1.09004 * 113.68805 * 89.11938 * 17 16 14 31 31 H 1.08998 * 113.61214 * 334.47811 * 18 14 12 32 32 H 1.09000 * 113.61645 * 105.29967 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5526 3.6186 -0.6731 8 14 3.4368 3.4177 -3.4339 9 1 2.1390 3.5949 -4.1335 10 1 4.1794 4.7036 -3.4339 11 1 4.2394 2.3831 -4.1343 12 6 2.1389 -1.1671 -0.0005 13 8 3.3466 -1.1702 0.1106 14 6 1.3918 -2.4686 -0.1392 15 7 0.3769 -2.4334 -1.2007 16 6 2.3086 -3.7014 -0.2041 17 6 1.2751 -4.4161 0.6869 18 6 0.8677 -3.0233 1.1959 19 1 -0.3633 -0.1042 1.0223 20 1 -0.3633 0.9376 -0.4210 21 1 -0.3633 -0.8333 -0.6014 22 1 1.6085 2.0284 0.5138 23 1 3.1500 1.1383 0.5138 24 1 4.0288 4.4448 -0.8503 25 1 0.8052 -2.3162 -2.1067 26 1 -0.1994 -3.2612 -1.1775 27 1 2.3956 -4.1286 -1.2032 28 1 3.2741 -3.5535 0.2796 29 1 1.7225 -5.0478 1.4543 30 1 0.4896 -4.9230 0.1263 31 1 1.4400 -2.6903 2.0618 32 1 -0.2075 -2.9021 1.3272 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088050175.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = -8.248361 kcal Electronic energy + Delta-G solvation = -14658.420498 eV Core-core repulsion = 12233.916802 eV Total energy + Delta-G solvation = -2424.503696 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15000 -37.27481 -34.68264 -32.55823 -31.40814 -27.81984 -25.99418 -25.59628 -24.78040 -22.57954 -19.66390 -18.08232 -16.59527 -16.43004 -15.69677 -15.19672 -14.89991 -14.44750 -14.05126 -13.55704 -12.73971 -12.61657 -12.40125 -12.05892 -11.73103 -11.51537 -11.11505 -10.95970 -10.93009 -10.81085 -10.48707 -10.35327 -10.10079 -9.58300 -8.96647 -8.38059 -8.32181 -7.39144 -5.98103 -4.02868 3.34944 3.36898 3.39117 3.44690 4.14755 4.37385 4.48875 4.58756 4.74004 4.91177 5.14435 5.34797 5.51629 5.67582 5.82802 5.89954 6.00199 6.07623 6.24682 6.31422 6.33784 6.79522 7.07139 7.19638 7.39342 7.53937 7.70984 7.99872 8.31593 8.61577 8.97010 9.22096 9.62061 11.09795 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048495 B = 0.008184 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.246452 B = 3420.498162 C = 3455.988054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.585 5.585 3 C 0.241 3.759 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.550 6.550 14 C 0.075 3.925 15 N -0.806 5.806 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.121 4.121 19 H 0.027 0.973 20 H 0.060 0.940 21 H 0.116 0.884 22 H 0.030 0.970 23 H 0.041 0.959 24 H 0.263 0.737 25 H 0.351 0.649 26 H 0.341 0.659 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 -13.372 1.083 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.315 5.315 3 C 0.122 3.878 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.307 3.693 13 O -0.429 6.429 14 C -0.021 4.021 15 N -0.338 5.338 16 C -0.191 4.191 17 C -0.181 4.181 18 C -0.159 4.159 19 H 0.046 0.954 20 H 0.079 0.921 21 H 0.134 0.866 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.166 0.834 26 H 0.155 0.845 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.714 -12.488 1.550 14.761 hybrid contribution 0.590 -0.303 -1.325 1.481 sum -7.125 -12.791 0.225 14.643 Atomic orbital electron populations 1.22334 0.80781 1.05178 1.00574 1.47976 1.06818 1.07065 1.69628 1.19302 0.92608 0.78570 0.97346 1.21421 1.36227 1.06240 0.92336 0.92495 1.24950 0.95477 0.96426 0.97382 1.69932 1.38542 1.14328 1.30748 0.86556 0.78307 0.77770 0.84747 1.20241 1.21201 1.20275 1.19804 0.87144 0.84580 0.77755 1.90645 1.14157 1.86897 1.51156 1.22196 0.92346 0.93418 0.94187 1.58632 1.23417 1.44531 1.07178 1.23579 0.99559 0.95614 1.00380 1.22913 0.99001 0.96421 0.99795 1.22967 1.01729 0.95244 0.95990 0.95411 0.92150 0.86646 0.95215 0.94059 0.92733 0.83398 0.84483 0.91594 0.88269 0.91072 0.90354 0.89284 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 10.18 59.85 0.61 1.61 16 2 N -0.59 -13.28 2.86 -182.94 -0.52 -13.80 16 3 C 0.24 6.67 5.18 -5.19 -0.03 6.65 16 4 C -0.52 -15.39 9.39 -34.44 -0.32 -15.71 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 8 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.52 11.40 7.00 -10.99 -0.08 11.32 16 13 O -0.55 -14.38 15.44 5.55 0.09 -14.29 16 14 C 0.07 1.15 0.95 -131.94 -0.12 1.02 16 15 N -0.81 -10.06 6.32 0.47 0.00 -10.05 16 16 C -0.15 -2.09 7.24 -25.78 -0.19 -2.27 16 17 C -0.14 -1.52 7.75 -25.78 -0.20 -1.72 16 18 C -0.12 -1.53 7.32 -25.92 -0.19 -1.72 16 19 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 21 H 0.12 1.83 4.62 -51.93 -0.24 1.59 16 22 H 0.03 0.84 8.07 -51.92 -0.42 0.42 16 23 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 25 H 0.35 4.50 9.08 -39.29 -0.36 4.15 16 26 H 0.34 3.17 8.15 -39.29 -0.32 2.85 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.59 7.40 -51.93 -0.38 1.21 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 31 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 266.43 15.07 4.01 4.01 Total: -1.00 -33.57 266.43 -5.90 -39.47 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.58 Total: 3.21 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.62 Total: 0.83 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.22 Total: -50.54 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.57 -5.90 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088050175.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.218 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds