Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00262 * 2 1 4 4 C 1.50706 * 109.47195 * 270.00289 * 3 2 1 5 5 H 1.07996 * 119.99442 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99627 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00403 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99659 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47121 * 59.99839 * 8 6 4 10 10 H 1.48503 * 109.47212 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46945 * 300.00023 * 8 6 4 12 12 C 1.34768 * 120.00121 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00474 * 186.07161 * 12 2 1 14 14 C 1.50707 * 120.00160 * 6.07181 * 12 2 1 15 15 N 1.46903 * 112.84722 * 45.43157 * 14 12 2 16 16 C 1.53777 * 113.61751 * 176.62846 * 14 12 2 17 17 C 1.54046 * 86.98841 * 140.02063 * 16 14 12 18 18 C 1.53778 * 113.61413 * 274.23799 * 14 12 2 19 19 H 1.08995 * 109.46962 * 264.17939 * 1 2 3 20 20 H 1.09005 * 109.46835 * 24.18033 * 1 2 3 21 21 H 1.08996 * 109.46931 * 144.17956 * 1 2 3 22 22 H 1.09007 * 109.46827 * 29.99799 * 3 2 1 23 23 H 1.08999 * 109.47056 * 150.00148 * 3 2 1 24 24 H 0.97000 * 120.00076 * 180.02562 * 7 6 4 25 25 H 1.00898 * 110.99885 * 64.72555 * 15 14 12 26 26 H 1.00894 * 111.00080 * 188.68352 * 15 14 12 27 27 H 1.09007 * 113.60962 * 254.61472 * 16 14 12 28 28 H 1.08996 * 113.61732 * 25.51544 * 16 14 12 29 29 H 1.08999 * 113.62174 * 220.02204 * 17 16 14 30 30 H 1.09004 * 113.68805 * 89.11938 * 17 16 14 31 31 H 1.08998 * 113.61214 * 334.47811 * 18 14 12 32 32 H 1.09000 * 113.61645 * 105.29967 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5526 3.6186 -0.6731 8 14 3.4368 3.4177 -3.4339 9 1 2.1390 3.5949 -4.1335 10 1 4.1794 4.7036 -3.4339 11 1 4.2394 2.3831 -4.1343 12 6 2.1389 -1.1671 -0.0005 13 8 3.3466 -1.1702 0.1106 14 6 1.3918 -2.4686 -0.1392 15 7 0.3769 -2.4334 -1.2007 16 6 2.3086 -3.7014 -0.2041 17 6 1.2751 -4.4161 0.6869 18 6 0.8677 -3.0233 1.1959 19 1 -0.3633 -0.1042 1.0223 20 1 -0.3633 0.9376 -0.4210 21 1 -0.3633 -0.8333 -0.6014 22 1 1.6085 2.0284 0.5138 23 1 3.1500 1.1383 0.5138 24 1 4.0288 4.4448 -0.8503 25 1 0.8052 -2.3162 -2.1067 26 1 -0.1994 -3.2612 -1.1775 27 1 2.3956 -4.1286 -1.2032 28 1 3.2741 -3.5535 0.2796 29 1 1.7225 -5.0478 1.4543 30 1 0.4896 -4.9230 0.1263 31 1 1.4400 -2.6903 2.0618 32 1 -0.2075 -2.9021 1.3272 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088050175.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = -33.613861 kcal Electronic energy + Delta-G solvation = -14659.520429 eV Core-core repulsion = 12233.916802 eV Total energy + Delta-G solvation = -2425.603627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.52776 -38.79925 -36.57749 -34.71224 -32.52707 -29.87454 -27.50195 -26.69100 -26.40364 -24.40312 -21.05987 -19.42611 -18.68332 -18.04976 -17.30957 -16.70197 -16.35280 -16.02818 -15.49148 -15.07277 -14.32005 -14.23725 -13.93124 -13.57131 -13.36497 -13.18138 -12.90190 -12.73426 -12.47516 -12.20120 -12.15651 -11.79665 -11.73375 -11.43576 -10.65969 -10.56626 -9.65996 -9.16979 -8.22999 -6.39417 1.35234 1.40342 1.47782 1.75082 2.34618 2.52761 3.05272 3.29136 3.49477 3.71845 3.80051 3.92237 4.43694 4.68931 4.72034 4.82119 4.85147 4.97068 4.99159 5.06588 5.08778 5.20018 5.32043 5.42985 5.60205 5.89446 5.99807 6.06107 6.54567 6.68958 6.87228 7.26417 7.50225 8.83934 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.048495 B = 0.008184 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.246452 B = 3420.498162 C = 3455.988054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.593 5.593 3 C 0.254 3.746 4 C -0.543 4.543 5 H 0.056 0.944 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.508 3.492 13 O -0.607 6.607 14 C 0.079 3.921 15 N -0.800 5.800 16 C -0.158 4.158 17 C -0.117 4.117 18 C -0.119 4.119 19 H 0.048 0.952 20 H 0.049 0.951 21 H 0.145 0.855 22 H 0.016 0.984 23 H -0.007 1.007 24 H 0.268 0.732 25 H 0.352 0.648 26 H 0.367 0.633 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -15.104 -0.281 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.322 5.322 3 C 0.132 3.868 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.195 4.195 7 N -0.571 5.571 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.201 1.201 12 C 0.296 3.704 13 O -0.489 6.489 14 C -0.018 4.018 15 N -0.334 5.334 16 C -0.199 4.199 17 C -0.154 4.154 18 C -0.157 4.157 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.162 0.838 22 H 0.034 0.966 23 H 0.011 0.989 24 H 0.076 0.924 25 H 0.166 0.834 26 H 0.185 0.815 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.837 -14.258 0.193 17.324 hybrid contribution 1.242 0.247 -0.843 1.521 sum -8.595 -14.011 -0.650 16.451 Atomic orbital electron populations 1.22608 0.77754 1.05865 1.02484 1.48047 1.08599 1.05822 1.69742 1.18788 0.90908 0.80838 0.96225 1.21677 1.36895 1.06753 0.92814 0.92590 1.25960 0.94806 0.96318 1.02419 1.70067 1.38929 1.14778 1.33335 0.85387 0.78906 0.77379 0.78642 1.18293 1.20242 1.20101 1.21083 0.86987 0.86345 0.75952 1.90604 1.16995 1.87988 1.53311 1.22112 0.93316 0.89477 0.96881 1.58400 1.22530 1.46181 1.06301 1.23595 0.98822 0.95633 1.01815 1.22873 0.98217 0.95210 0.99114 1.22999 1.02835 0.96280 0.93619 0.93321 0.93250 0.83783 0.96596 0.98860 0.92358 0.83393 0.81548 0.90189 0.91553 0.89862 0.86796 0.91238 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.93 10.18 127.77 1.30 3.23 16 2 N -0.59 -27.53 2.86 -851.11 -2.43 -29.96 16 3 C 0.25 14.78 5.18 85.63 0.44 15.22 16 4 C -0.54 -32.79 9.39 25.60 0.24 -32.55 16 5 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 6 C 0.00 0.21 5.46 84.65 0.46 0.68 16 7 N -0.93 -58.51 13.29 21.45 0.28 -58.22 16 8 Si 0.97 46.02 29.54 68.60 2.03 48.04 16 9 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.51 22.71 7.00 87.66 0.61 23.32 16 13 O -0.61 -33.51 15.44 -3.04 -0.05 -33.55 16 14 C 0.08 2.27 0.95 3.31 0.00 2.28 16 15 N -0.80 -17.35 6.32 -152.43 -0.96 -18.31 16 16 C -0.16 -4.12 7.24 31.21 0.23 -3.90 16 17 C -0.12 -2.00 7.75 31.21 0.24 -1.76 16 18 C -0.12 -2.69 7.32 31.12 0.23 -2.47 16 19 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 20 H 0.05 1.83 8.03 -2.38 -0.02 1.81 16 21 H 0.15 4.18 4.62 -2.39 -0.01 4.17 16 22 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 23 H -0.01 -0.45 7.35 -2.39 -0.02 -0.47 16 24 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.35 8.06 9.08 -89.70 -0.81 7.24 16 26 H 0.37 4.97 8.15 -89.70 -0.73 4.24 16 27 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.07 2.18 7.40 -2.39 -0.02 2.16 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.23 7.72 -2.39 -0.02 1.21 16 31 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -77.27 266.43 2.21 -75.06 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.42 Total: 12.89 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 3.76 Total: 4.05 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -3.11 Total: -106.50 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.55 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -77.27 2.21 -75.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088050175.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.449 kcal (2) G-P(sol) polarization free energy of solvation -77.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds