Wall clock time and date at job start Mon Mar 30 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99948 * 2 1 4 4 O 1.21575 * 120.00104 * 354.73860 * 3 2 1 5 5 N 1.34775 * 119.99746 * 174.74042 * 3 2 1 6 6 C 1.37193 * 119.99986 * 184.11143 * 5 3 2 7 7 H 1.08004 * 120.00398 * 138.57173 * 6 5 3 8 8 C 1.38887 * 119.99689 * 318.56969 * 6 5 3 9 9 N 1.31463 * 119.99833 * 158.13197 * 8 6 5 10 10 Si 1.86796 * 119.99783 * 338.13348 * 8 6 5 11 11 H 1.48507 * 109.47335 * 95.53855 * 10 8 6 12 12 H 1.48501 * 109.47304 * 215.53562 * 10 8 6 13 13 H 1.48496 * 109.47304 * 335.53874 * 10 8 6 14 14 C 1.46504 * 120.00317 * 4.10443 * 5 3 2 15 15 C 1.54262 * 110.03009 * 119.16191 * 14 5 3 16 16 C 1.54971 * 104.15913 * 95.75676 * 15 14 5 17 17 C 1.54891 * 102.77577 * 37.88561 * 16 15 14 18 18 C 1.53874 * 110.03101 * 236.38308 * 14 5 3 19 19 H 1.09006 * 109.47011 * 300.00089 * 1 2 3 20 20 H 1.09003 * 109.47428 * 59.99508 * 1 2 3 21 21 H 1.08995 * 109.47210 * 179.97438 * 1 2 3 22 22 H 0.97002 * 119.99844 * 180.02562 * 2 1 3 23 23 H 0.97008 * 120.00120 * 180.02562 * 9 8 6 24 24 H 1.08997 * 110.01392 * 357.76908 * 14 5 3 25 25 H 1.08999 * 110.48659 * 214.39947 * 15 14 5 26 26 H 1.08994 * 110.49020 * 337.04366 * 15 14 5 27 27 H 1.09000 * 110.71910 * 279.57225 * 16 15 14 28 28 H 1.08994 * 110.92353 * 156.28989 * 16 15 14 29 29 H 1.09000 * 110.48970 * 203.40717 * 17 16 15 30 30 H 1.09005 * 110.60324 * 80.81578 * 17 16 15 31 31 H 1.09001 * 110.03420 * 359.94995 * 18 14 5 32 32 H 1.09004 * 110.03646 * 121.38259 * 18 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5348 2.2179 -0.0965 5 7 3.4823 1.1697 0.1070 6 6 4.1616 2.3586 0.1920 7 1 4.9866 2.4612 0.8813 8 6 3.7882 3.4304 -0.6086 9 7 4.1115 4.6558 -0.2592 10 14 2.8267 3.1305 -2.1817 11 1 1.3754 3.2972 -1.9143 12 1 3.2543 4.1057 -3.2168 13 1 3.0857 1.7505 -2.6648 14 6 4.2175 -0.0973 0.1327 15 6 5.1913 -0.1675 -1.0616 16 6 6.5432 0.3149 -0.4773 17 6 6.5423 -0.3028 0.9431 18 6 5.0759 -0.1828 1.4069 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.9499 -0.8401 -0.0004 23 1 3.8504 5.4044 -0.8181 24 1 3.5200 -0.9341 0.0956 25 1 5.2766 -1.1917 -1.4246 26 1 4.8623 0.4955 -1.8616 27 1 6.5744 1.4032 -0.4253 28 1 7.3789 -0.0666 -1.0638 29 1 7.1991 0.2617 1.6050 30 1 6.8465 -1.3489 0.9067 31 1 4.9462 0.7187 2.0057 32 1 4.7951 -1.0612 1.9881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125190553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:11 Heat of formation + Delta-G solvation = -37.245498 kcal Electronic energy + Delta-G solvation = -15252.474891 eV Core-core repulsion = 12826.713785 eV Total energy + Delta-G solvation = -2425.761106 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33048 -38.75729 -35.75729 -35.09695 -33.63548 -29.44141 -28.83876 -28.07854 -25.41556 -22.29270 -21.43539 -20.73289 -20.10956 -18.01658 -17.29728 -16.57270 -16.24897 -15.82578 -15.77506 -14.94934 -14.85626 -14.25658 -13.95365 -13.86873 -13.15981 -12.97523 -12.77645 -12.34220 -12.17143 -11.94542 -11.80598 -11.71837 -11.56856 -11.19606 -10.80237 -10.65351 -9.91351 -9.41781 -8.32104 -5.98198 1.25083 1.36841 1.53982 2.23359 2.31679 2.62300 3.17039 3.39888 3.84074 3.93395 4.13136 4.49052 4.57478 4.68571 4.70854 4.79450 4.83622 4.94967 4.95799 5.09680 5.19857 5.26118 5.45420 5.48021 5.71861 5.73345 5.78979 5.91990 6.38048 7.04447 7.20132 7.61412 8.12949 8.78313 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.024541 B = 0.017787 C = 0.012442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.678183 B = 1573.786321 C = 2249.976780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.750 5.750 3 C 0.646 3.354 4 O -0.631 6.631 5 N -0.493 5.493 6 C -0.305 4.305 7 H 0.073 0.927 8 C 0.041 3.959 9 N -0.919 5.919 10 Si 0.967 3.033 11 H -0.290 1.290 12 H -0.317 1.317 13 H -0.270 1.270 14 C 0.125 3.875 15 C -0.126 4.126 16 C -0.121 4.121 17 C -0.109 4.109 18 C -0.127 4.127 19 H 0.040 0.960 20 H 0.032 0.968 21 H 0.120 0.880 22 H 0.407 0.593 23 H 0.266 0.734 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -16.730 -0.192 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.411 5.411 3 C 0.350 3.650 4 O -0.516 6.516 5 N -0.219 5.219 6 C -0.433 4.433 7 H 0.091 0.909 8 C -0.161 4.161 9 N -0.559 5.559 10 Si 0.800 3.200 11 H -0.218 1.218 12 H -0.247 1.247 13 H -0.195 1.195 14 C 0.022 3.978 15 C -0.165 4.165 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.165 4.165 19 H 0.059 0.941 20 H 0.051 0.949 21 H 0.138 0.862 22 H 0.245 0.755 23 H 0.075 0.925 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.133 -15.844 -0.248 15.846 hybrid contribution -0.337 0.556 -0.676 0.938 sum -0.204 -15.288 -0.924 15.317 Atomic orbital electron populations 1.21427 0.78025 1.03724 1.00353 1.45019 1.07919 1.06494 1.81670 1.16744 0.83137 0.84417 0.80730 1.90691 1.68463 1.32350 1.60054 1.43116 1.01791 1.06344 1.70662 1.18305 1.16172 0.87596 1.21179 0.90929 1.25850 0.95674 0.94571 1.00007 1.69892 1.48530 0.99078 1.38394 0.85467 0.79228 0.76840 0.78494 1.21787 1.24744 1.19525 1.22038 0.94244 0.85357 0.96196 1.22669 0.95672 1.01336 0.96799 1.22440 0.96758 0.99854 0.96782 1.22250 0.95251 1.01476 0.95632 1.22451 0.95778 1.01586 0.96727 0.94091 0.94949 0.86160 0.75484 0.92489 0.88380 0.88168 0.94515 0.94178 0.90290 0.92536 0.88864 0.94012 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.15 10.71 127.77 1.37 4.52 16 2 N -0.75 -26.23 5.62 -500.20 -2.81 -29.04 16 3 C 0.65 31.47 6.69 179.05 1.20 32.66 16 4 O -0.63 -37.35 11.46 -3.95 -0.05 -37.39 16 5 N -0.49 -23.43 2.06 -626.05 -1.29 -24.72 16 6 C -0.30 -17.48 7.51 84.01 0.63 -16.85 16 7 H 0.07 4.42 6.99 -2.91 -0.02 4.39 16 8 C 0.04 2.57 4.79 84.90 0.41 2.97 16 9 N -0.92 -60.13 13.96 21.65 0.30 -59.83 16 10 Si 0.97 54.51 24.85 68.60 1.70 56.21 16 11 H -0.29 -17.62 6.23 99.48 0.62 -17.00 16 12 H -0.32 -17.49 7.11 99.48 0.71 -16.78 16 13 H -0.27 -14.20 6.80 99.48 0.68 -13.52 16 14 C 0.13 4.30 3.34 45.71 0.15 4.45 16 15 C -0.13 -4.11 6.14 31.70 0.19 -3.91 16 16 C -0.12 -3.84 6.56 31.91 0.21 -3.63 16 17 C -0.11 -2.92 6.83 31.67 0.22 -2.70 16 18 C -0.13 -3.93 6.18 31.32 0.19 -3.74 16 19 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 20 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.12 2.09 8.14 -2.39 -0.02 2.08 16 22 H 0.41 10.77 6.23 -92.71 -0.58 10.20 16 23 H 0.27 16.64 8.31 -92.70 -0.77 15.87 16 24 H 0.10 2.60 5.49 -2.39 -0.01 2.59 16 25 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.04 1.46 7.72 -2.39 -0.02 1.44 16 27 H 0.04 1.63 7.17 -2.39 -0.02 1.61 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.04 1.63 6.78 -2.39 -0.02 1.61 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -79.21 250.68 2.85 -76.36 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.42 Total: 4.63 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 4.57 Total: 13.78 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -3.80 Total: -113.59 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.05 Total: -37.39 kcal Atomic # 14 Polarization: 54.51 SS G_CDS: 1.70 Total: 56.21 kcal Total: -79.21 2.85 -76.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125190553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.117 kcal (2) G-P(sol) polarization free energy of solvation -79.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds